1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TTTCTATAAAGGCCGTGCTCCAAGTAAAGAGCGCACAGACTGGGTGATGCATGAGTATACAATGGATGAAGAGGAGCTCAAGAGATGCCCGAATGTGCAGgtattttgctcaaaatgatttttttttttaattattagtatcttatgtcgataattgtctattgaaattggttatctttccatgtttcag
species | Vitis vinifera |
transcript | Vv18s0001g01820.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AATGGATGAAGAGGAGCTCAAGAGATGCCCGAATGTGCAG GATTATTATGCACTTTATAAGGTCTTCAAGAAGAGTGGACCTGGTCCCAAAEST: gi|161720508|gb|FC070907.1|FC070907
genomic: AATGGATGAAGAGGAGCTCAAGAGATGCCCGAATGTGCAGgtattttgct ... catgtttcagGATTATTATGCACTTTATAAGGTCTTCAAGAAGAGTGGACCTGGTCCCAAA
EST: ATGAGTATACAATGGATGAAGAGGAGCTCAAGAGATGCCCGAATGTGCAG GATTATTATGCACTTTATAAGGTCTTCAAGAAGAGTGGACCTGGTCC-AAAEST: gi|161716141|gb|FC068060.1|FC068060
genomic: ATGAGTATACAATGGATGAAGAGGAGCTCAAGAGATGCCCGAATGTGCAGgtattttgct ... catgtttcagGATTATTATGCACTTTATAAGGTCTTCAAGAAGAGTGGACCTGGTCCCAAA
EST: ATGAGTATACAATGGATGAAGAGGAGCTCAAGAGATGCCCGAATGTGCAG GATTATTATGCACTTTATAAGGTCTTCAAGAAGAGTGGACCTGGTCCCAAAEST: gi|161720743|gb|FC070650.1|FC070650
genomic: ATGAGTATACAATGGATGAAGAGGAGCTCAAGAGATGCCCGAATGTGCAGgtattttgct ... catgtttcagGATTATTATGCACTTTATAAGGTCTTCAAGAAGAGTGGACCTGGTCCCAAA
EST: ATGAGTATACAATGGATGAAGAGGAGCTCAAGAGATGCCCGAATGTGCAG GATTATTATGCACTTTATAAGGTCTTCAAGAAGAGTGGACCTGGTC
genomic: ATGAGTATACAATGGATGAAGAGGAGCTCAAGAGATGCCCGAATGTGCAGgtattttgct ... catgtttcagGATTATTATGCACTTTATAAGGTCTTCAAGAAGAGTGGACCTGGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTCTATAAAGGCCGTGCTCCAAGTAAAGAGCGCACAGACTGGGTGATGCATGAGTATACAATGGATGAAGAGGAGCTCAAGAGATGCCCGAATGTGCAGgtattttgctcaaaatgatttttttttttaattattagtatcttatgtcgataattgtctattgaaattggttatctttccatgtttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG