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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGTAAGGAAGAGAGGGAGAAGCATGAGAGCCAAACCCTACCCAATTTACTAACAAACCACAATAGAGACTTTCTCTTGGGTCGTCCCACAGCTAAACAGgtgagtcccctacattgctccactctaatcgacttggacctcaactgaggcaactcaattttagggtataatcacttgggaaatttacacaaacatgcta...

Basic information

species Vitis vinifera
transcript Vv18s0001g01030.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34544810|gb|CF513042.1|CF513042
EST:     TAACAAACCACAATAGAGACTTTCTCTTGGGTCGTCCCACAGCTAAACAG                         GTGCCTATTTCTTCTTTAATAGGCAAGACAATCGGACTCTACTTCTCAGCT
genomic: TAACAAACCACAATAGAGACTTTCTCTTGGGTCGTCCCACAGCTAAACAGgtgagtcccc ... ttatgtgcagGTGCCTATTTCTTCTTTAATAGGCAAGACAATCGGACTCTACTTCTCAGCT
EST: gi|110711973|gb|EE089062.1|EE089062
EST:     TAACAAACCACAATAGAGACTTTCTCTTGGGTCGTCCCACAGCTAAACAG                         GTGCCTATTTCTTCTTTA-TAGGCAAGACAATCGGACTCTACTTCNTCAGC
genomic: TAACAAACCACAATAGAGACTTTCTCTTGGGTCGTCCCACAGCTAAACAGgtgagtcccc ... ttatgtgcagGTGCCTATTTCTTCTTTAATAGGCAAGACAATCGGACTCTACTTC-TCAGC
EST: gi|110714755|gb|EE092028.1|EE092028
EST:     TAACAAACCACAATAGAGACTTTCTCTTGGGTCGTCCCACAGCTAAACAG                         GTGCCTATTTCTTCTTTAATAGGCAAGACAATCGGACTCTACTTCTCAGCT
genomic: TAACAAACCACAATAGAGACTTTCTCTTGGGTCGTCCCACAGCTAAACAGgtgagtcccc ... ttatgtgcagGTGCCTATTTCTTCTTTAATAGGCAAGACAATCGGACTCTACTTCTCAGCT
EST: gi|110395811|gb|EC961483.1|EC961483
EST:     TAACAAACCACAATAGAGACTTTCTCTTGGGTCGTCCCACAGCTAAACAG                         GTGCCTATTTCTTCTTTAATAGGCAAGACAATCGGACTCTACTTCTCAGCT
genomic: TAACAAACCACAATAGAGACTTTCTCTTGGGTCGTCCCACAGCTAAACAGgtgagtcccc ... ttatgtgcagGTGCCTATTTCTTCTTTAATAGGCAAGACAATCGGACTCTACTTCTCAGCT
EST: gi|110713352|gb|EE089200.1|EE089200
EST:     TAACAAACCACAATAGAGACTTTCTCTTGGGTCGTCCCACAGCTAAACAG                         GTGCCTATTTCTTCTTTAATAGGCAAGACAATCGGACTCTACTTCTCAGCT
genomic: TAACAAACCACAATAGAGACTTTCTCTTGGGTCGTCCCACAGCTAAACAGgtgagtcccc ... ttatgtgcagGTGCCTATTTCTTCTTTAATAGGCAAGACAATCGGACTCTACTTCTCAGCT
EST: gi|110701836|gb|EE079864.1|EE079864
EST:     TAACAAACCACAATAGAGACTTTCTCTTGAGTCGTCCCACAGCTAAACAA                         GTGCCTATTTCTTCTTTAATAGGCAAGACAATCGGACTCTACTTCTCAGCT
genomic: TAACAAACCACAATAGAGACTTTCTCTTGGGTCGTCCCACAGCTAAACAGgtgagtcccc ... ttatgtgcagGTGCCTATTTCTTCTTTAATAGGCAAGACAATCGGACTCTACTTCTCAGCT
EST: gi|110700953|gb|EE078058.1|EE078058
EST:     TAACAAACCACAATAGAGACTTTCTCTTGAGTCGTCCCACAGCTAAACAA                         GTGCCTATTTCTTCTTTAATAAGCAAGACAATCGGACTCTACTTCTCAGCT
genomic: TAACAAACCACAATAGAGACTTTCTCTTGGGTCGTCCCACAGCTAAACAGgtgagtcccc ... ttatgtgcagGTGCCTATTTCTTCTTTAATAGGCAAGACAATCGGACTCTACTTCTCAGCT
EST: gi|33410563|gb|CF216190.1|CF216190
EST:     TAACAAACCACAATAGAGACTTTCTCTTGGGTCGTCCCACAGCTAAACAG                         GTGCCTATTTCTTCTTTAATAGGCAAGACAATCGGACTCTACTTCTCAGCT
genomic: TAACAAACCACAATAGAGACTTTCTCTTGGGTCGTCCCACAGCTAAACAGgtgagtcccc ... ttatgtgcagGTGCCTATTTCTTCTTTAATAGGCAAGACAATCGGACTCTACTTCTCAGCT
EST: gi|156736462|gb|EV240583.1|EV240583
EST:     TAACAAACCACAATAGAGACTTTCTCTTGGGTCGTCCCACAGCTAAACAG                         GTGCCTATTTCTTCTTTAATAGGCAAGACAATCGGACTCTACTTCTCAGCT
genomic: TAACAAACCACAATAGAGACTTTCTCTTGGGTCGTCCCACAGCTAAACAGgtgagtcccc ... ttatgtgcagGTGCCTATTTCTTCTTTAATAGGCAAGACAATCGGACTCTACTTCTCAGCT
EST: gi|30305343|gb|CB982137.1|CB982137
EST:     TAACAAACCACAATAGAGACTTTCTCTTGGGTCGTCCCACAGCTAAACAG                         GTGCCTATTTCTTCTTTAATAGGCAAGACAATCGGACTCTACTTCTCAGCT
genomic: TAACAAACCACAATAGAGACTTTCTCTTGGGTCGTCCCACAGCTAAACAGgtgagtcccc ... ttatgtgcagGTGCCTATTTCTTCTTTAATAGGCAAGACAATCGGACTCTACTTCTCAGCT
EST: gi|110684953|gb|EE062820.1|EE062820
EST:     TAACAAACCACAATAGAGACTTTCTCTTGGGTCGTCCCACAGCTAAACAG                         GTGCCTATTTCTTCTTTAATAGGCAAGACAATCGGACTCTACTTCTCAGCT
genomic: TAACAAACCACAATAGAGACTTTCTCTTGGGTCGTCCCACAGCTAAACAGgtgagtcccc ... ttatgtgcagGTGCCTATTTCTTCTTTAATAGGCAAGACAATCGGACTCTACTTCTCAGCT
EST: gi|110411911|gb|EC977641.1|EC977641
EST:     GACTTTCTCTTGGGTCGTCCCACAGCTAAACAG                         GTGCCTATTTCTTCTTTAATAGGCAAGACAATCGGACTCTACTTCTCAGCT
genomic: GACTTTCTCTTGGGTCGTCCCACAGCTAAACAGgtgagtcccc ... ttatgtgcagGTGCCTATTTCTTCTTTAATAGGCAAGACAATCGGACTCTACTTCTCAGCT
EST: gi|34549727|gb|CF517959.1|CF517959
EST:     TAACAAACCACAATAGAGACTTTCTCTTGGGTCGTCCCACAGCTAAACAG                         GTGCCTATTTCTTCTTTAATAGGCAAGACAATCGGACTCTACTTCTCAGCT
genomic: TAACAAACCACAATAGAGACTTTCTCTTGGGTCGTCCCACAGCTAAACAGgtgagtcccc ... ttatgtgcagGTGCCTATTTCTTCTTTAATAGGCAAGACAATCGGACTCTACTTCTCAGCT
EST: gi|110690534|gb|EE067717.1|EE067717
EST:     TAACAAACCACAATAGAGACTTTCTCTTGGGTCGTCCCACAGCTAAACAG                         GTGCCTATTTCTTCTTTAATAGGCAAGACAATCGGACTCTACTTCTCAGCT
genomic: TAACAAACCACAATAGAGACTTTCTCTTGGGTCGTCCCACAGCTAAACAGgtgagtcccc ... ttatgtgcagGTGCCTATTTCTTCTTTAATAGGCAAGACAATCGGACTCTACTTCTCAGCT
EST: gi|161716496|gb|FC066194.1|FC066194
EST:     TAACAAACCACAATAGAGACTTTCTCTTGGGTCGTCCCACAGCTAAACAG                         GTGCCTATTTCTTCTTTAATAGGCAAGACAATCGGACTCTACTTCTCAGCT
genomic: TAACAAACCACAATAGAGACTTTCTCTTGGGTCGTCCCACAGCTAAACAGgtgagtcccc ... ttatgtgcagGTGCCTATTTCTTCTTTAATAGGCAAGACAATCGGACTCTACTTCTCAGCT
EST: gi|110418424|gb|EC984579.1|EC984579
EST:     TAACAAACCACAATAGAGACTTTCTCTTGGGTCGTCCCACAGCTAAACAG                         GTGCCTATTTCTTCTTTAATAGGCAAGACAATCGGACTCTACTTCTCAGCT
genomic: TAACAAACCACAATAGAGACTTTCTCTTGGGTCGTCCCACAGCTAAACAGgtgagtcccc ... ttatgtgcagGTGCCTATTTCTTCTTTAATAGGCAAGACAATCGGACTCTACTTCTCAGCT
EST: gi|110713551|gb|EE089581.1|EE089581
EST:     TAACAAACCACAATAGAGACTTTCTCTTGGGTCGTNCCACAGCTAAACAG                         GTGCCTATTTCTTCTTTTATAGGCAAGACAATCGGACTCTACTTCTCAGCT
genomic: TAACAAACCACAATAGAGACTTTCTCTTGGGTCGTCCCACAGCTAAACAGgtgagtcccc ... ttatgtgcagGTGCCTATTTCTTCTTTAATAGGCAAGACAATCGGACTCTACTTCTCAGCT
EST: gi|110700220|gb|EE078008.1|EE078008
EST:     TAACAAACCACAATAGAGACTTTCTCTTGGGTCGTCCCACAGCTAAACAG                         GTGCCTATTTCTTCTTTANTAGGCAAGACAATCGGACTCTACTTCTCANCT
genomic: TAACAAACCACAATAGAGACTTTCTCTTGGGTCGTCCCACAGCTAAACAGgtgagtcccc ... ttatgtgcagGTGCCTATTTCTTCTTTAATAGGCAAGACAATCGGACTCTACTTCTCAGCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCGTAAGGAAGAGAGGGAGAAGCATGAGAGCCAAACCCTACCCAATTTACTAACAAACCACAATAGAGACTTTCTCTTGGGTCGTCCCACAGCTAAACAGgtgagtcccctacattgctccactctaatcgacttggacctcaactgaggcaactcaattttagggtataatcacttgggaaatttacacaaacatgcta

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccctac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaggcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gggaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acacaaa