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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAACGGGAACGATTCCGATGTCCGATCCGAATCGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAGgtgagttcctgttaacgaaatcctgttcaatttttatttttatagtaatttagggtttattttttaggcttattttttttggaaattttcttag

Basic information

species Vitis vinifera
transcript Vv18s0001g00750.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32272198|gb|CD721357.1|CD721357
EST:     CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAG                         GATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACG
genomic: CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAGgtgagttcct ... attttcttagGATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACG
EST: gi|351030673|gb|FQ438511.1|FQ438511
EST:     CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAG                         GATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACG
genomic: CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAGgtgagttcct ... attttcttagGATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACG
EST: gi|30326615|gb|CD009877.1|CD009877
EST:     CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAG                         GATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACG
genomic: CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAGgtgagttcct ... attttcttagGATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACG
EST: gi|32248331|gb|CD714150.1|CD714150
EST:     CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAG                         GATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACG
genomic: CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAGgtgagttcct ... attttcttagGATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACG
EST: gi|110367582|gb|EC931522.1|EC931522
EST:     CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAG                         GATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACG
genomic: CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAGgtgagttcct ... attttcttagGATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACG
EST: gi|30325841|gb|CD009103.1|CD009103
EST:     CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAG                         GATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACG
genomic: CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAGgtgagttcct ... attttcttagGATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACG
EST: gi|110426950|gb|EC993379.1|EC993379
EST:     CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAG                         GATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACG
genomic: CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAGgtgagttcct ... attttcttagGATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACG
EST: gi|110397725|gb|EC963577.1|EC963577
EST:     CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAG                         GATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACG
genomic: CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAGgtgagttcct ... attttcttagGATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACG
EST: gi|30327911|gb|CD011173.1|CD011173
EST:     CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAG                         GATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACG
genomic: CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAGgtgagttcct ... attttcttagGATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACG
EST: gi|110411458|gb|EC977172.1|EC977172
EST:     CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAG                         GATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACG
genomic: CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAGgtgagttcct ... attttcttagGATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACG
EST: gi|32267575|gb|CD716538.1|CD716538
EST:     CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAG                         GATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACG
genomic: CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAGgtgagttcct ... attttcttagGATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACG
EST: gi|30325217|gb|CD008479.1|CD008479
EST:     CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAG                         GATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACG
genomic: CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAGgtgagttcct ... attttcttagGATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACG
EST: gi|110721872|gb|EE097605.1|EE097605
EST:     CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAG                         GATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACG
genomic: CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAGgtgagttcct ... attttcttagGATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACG
EST: gi|30322568|gb|CD005830.1|CD005830
EST:     CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAG                         GATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACG
genomic: CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAGgtgagttcct ... attttcttagGATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACG
EST: gi|30127790|gb|CB913129.1|CB913129
EST:     CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAG                         GATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACG
genomic: CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAGgtgagttcct ... attttcttagGATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACG
EST: gi|32248255|gb|CD714074.1|CD714074
EST:     CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAG                         GATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACG
genomic: CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAGgtgagttcct ... attttcttagGATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACG
EST: gi|110383972|gb|EC948381.1|EC948381
EST:     CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAG                         GATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACG
genomic: CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAGgtgagttcct ... attttcttagGATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACG
EST: gi|32249309|gb|CD715128.1|CD715128
EST:     CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAG                         GATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACG
genomic: CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAGgtgagttcct ... attttcttagGATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACG
EST: gi|18459473|gb|BM437751.1|BM437751
EST:     CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAG                         GATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACG
genomic: CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAGgtgagttcct ... attttcttagGATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACG
EST: gi|351023996|gb|FQ423419.1|FQ423419
EST:     CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAG                         GATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACG
genomic: CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAGgtgagttcct ... attttcttagGATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACG
EST: gi|32272050|gb|CD721209.1|CD721209
EST:     CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAG                         GATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACG
genomic: CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAGgtgagttcct ... attttcttagGATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACG
EST: gi|37186187|gb|CF605540.1|CF605540
EST:     CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAG                         GATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACG
genomic: CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAGgtgagttcct ... attttcttagGATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACG
EST: gi|351041477|gb|FQ431503.1|FQ431503
EST:     CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAG                         GATGCGGCGATGGGGTTGGTTCTGAGCGCGGCGTCGGTGAGAGGTTGGACG
genomic: CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAGgtgagttcct ... attttcttagGATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACG
EST: gi|110695208|gb|EE072961.1|EE072961
EST:     CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAG                         GATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACG
genomic: CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAGgtgagttcct ... attttcttagGATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACG
EST: gi|30325131|gb|CD008393.1|CD008393
EST:     CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAG                         GATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACG
genomic: CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAGgtgagttcct ... attttcttagGATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACG
EST: gi|110381520|gb|EC934681.1|EC934681
EST:     CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAG                         GATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACG
genomic: CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAGgtgagttcct ... attttcttagGATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACG
EST: gi|27579911|gb|CB002606.1|CB002606
EST:     CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAG                         GATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACG
genomic: CGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAGgtgagttcct ... attttcttagGATGCGGCGATGGGGTTGGTTCTGAGTGCGGCGTCGGTGAGAGGTTGGACG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATAACGGGAACGATTCCGATGTCCGATCCGAATCGGATGAGTCAAGCTTGGTTCCCATCCTGACGAATCGTACTCTCTCGAAGgtgagttcctgttaacgaaatcctgttcaatttttatttttatagtaatttagggtttattttttaggcttattttttttggaaattttcttag

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