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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGCGGTTTGCAAAGCTTCTGCTTGGGGAAGATATGTCAGGCGGAGGGAAAGGAATTTCTACTGCACTTGCCATCTCCAATGCCATCACAAATCTTTCTGgtttgtttttgttttcaaaaacatcttttcgctttatttactctgaacttttaaagtctctggttttgtatctgcattggtttaaggggtgaatgtttcag

Basic information

species Vitis vinifera
transcript Vv18s0001g00550.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g00550.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: PP1S28_109V6.1 (Physcomitrella patens), 5'ss of exon 3
GAGCGGTTTGCAAAGCTTCTGCTTGGGGAAGATATGTCAGGCGGAGGGAAAGGAATTTCTACTGCACTTGCCATCTCCAATGCCATCACAAATCTTTCTGgtttgtttttgttttcaaaaacatcttttcgctttatttactctgaacttttaaagtctc--tggttttgtatctgcattggt--ttaaggggtgaatgtttcag----------------------------------------------
|||  |||||||||||||||||||||||| |||||||| || || || |||||  |||  |||||  | || || || ||  | ||||| ||| | || |||     |      ||  |    ||||      ||  |||  |     || |     ||   |||   | |   |||| || |  ||    |  || |   | |                                               
GAGAAGTTTGCAAAGCTTCTGCTTGGGGAGGATATGTCTGGTGGGGGAAAAGGTGTTTGCACTGCGTTGGCTATATCGAACTCAATCACGAATTTGTCAGgtacaaatcaacgatcttaccattcttgatctctttgttaaacaacctttctcccacctggatgggcatattgttgcagtgttgattctttgacgactagcttaaaaaaggcttccgcttcagcagctaatgccttagattgtgattgcag

upper sequence: Vv18s0001g00550.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: PP1S7_228V6.1 (Physcomitrella patens), 5'ss of exon 3
GAGCGGTTTGCAAAGCTTCTGCTTGGGGAAGATATGTCAGGCGGAGGGAAAGGAATTTCTACTGCACTTGCCATCTCCAATGCCATCACAAATCTTTCTGgt-----ttgtttttgttttcaaaaacatcttttc-------gctttatttactctgaacttttaaagtctctg--gttttgtatctgc----attggtttaaggggtgaatgtttcag---------------------------------
|||  |||||||||||| ||||||||||| ||||||||||| || || |||||  |||| || ||  | || || || ||  | ||||| ||| | || |||     |      | ||  |     |  |||| |         | |  || | |  || || | | ||  |||  || |||    |||    |||  |  ||  || ||   |  |                                   
GAGAAGTTTGCAAAGCTACTGCTTGGGGAGGATATGTCAGGTGGGGGCAAAGGTGTTTCCACAGCCTTAGCTATATCGAACTCAATCACGAATTTGTCAGgtgccaatcaacgatcttaccctttgccgctttgccaaagaaattcttcttccacctaatttatcatgttgctgtagtattgatattgcgatcattaatccaaacggggagcttcccgtttcgttacctaatgccctgatctgtggatacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33406600|gb|CF212227.1|CF212227
EST:     AGGAATTTCTACTGCACTTGCCATCTCCAATGCCATCACAAATCTTTCTG                         CTACTGTATTTGGGGAGCTATGGAAGTTGGAGCCATTGGCGCCAGAGAAGA
genomic: AGGAATTTCTACTGCACTTGCCATCTCCAATGCCATCACAAATCTTTCTGgtttgttttt ... aatgtttcagCTACTGTATTTGGGGAGCTATGGAAGTTGGAGCCATTGGCGCCAGAGAAGA