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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAAGTTATTTGAGCATCTAGGTTCCAGCGAACTTCACTTTCATTCTCTCTCATGGCGgtatgttgattctagctatggaattatgcatctttctctttattttgctttctgattttccccctttcttactttgtgaatgttgtag

Basic information

species Vitis vinifera
transcript Vv18s0001g00480.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|352769329|gb|FQ471478.1|FQ471478
EST:     TTTGAGCATCTAGGTTCCAGCGAACTTCACTTTCATTCTCTCTCATGGCG                         ATCGACAATCTTTTTAAAGATGATGCGACTGAAGAAAAGGGGGAGAGAGCC
genomic: TTTGAGCATCTAGGTTCCAGCGAACTTCACTTTCATTCTCTCTCATGGCGgtatgttgat ... aatgttgtagATCGACAATCTTTTTAAAGATGATGCGACTGAAGAAAAGGGGGAGAGAGCC
EST: gi|71880141|gb|DT029196.1|DT029196
EST:     TTTGAGCATCTAGGTTCCAGCGAACTTCACTTTCATTCTCTCTCATGGCG                         ATCGACAATCTTTTTAAAGATGATGCGACTGAAGAAAAGGGGGAGAGAGCC
genomic: TTTGAGCATCTAGGTTCCAGCGAACTTCACTTTCATTCTCTCTCATGGCGgtatgttgat ... aatgttgtagATCGACAATCTTTTTAAAGATGATGCGACTGAAGAAAAGGGGGAGAGAGCC
EST: gi|352782455|gb|FQ470358.1|FQ470358
EST:     TTTGAGCATCTAGGTTCCAGCGAACTTCACTTTCATTCTCTCTCATGGCG                         ATCGACAATCTTTTTAAAGATGATGCGACTGAAGAAAAGGGGGAGAGAGCC
genomic: TTTGAGCATCTAGGTTCCAGCGAACTTCACTTTCATTCTCTCTCATGGCGgtatgttgat ... aatgttgtagATCGACAATCTTTTTAAAGATGATGCGACTGAAGAAAAGGGGGAGAGAGCC
EST: gi|161714038|gb|FC064113.1|FC064113
EST:     TTTGAGCATCTAGGTTCCAGCGAACTTCACTTTCATTCTCTCTCATGGCG                         ATCGACAATCTTTTTAAAGATGATGCGACTGAAGAAAAGGGGGAGAGAGCC
genomic: TTTGAGCATCTAGGTTCCAGCGAACTTCACTTTCATTCTCTCTCATGGCGgtatgttgat ... aatgttgtagATCGACAATCTTTTTAAAGATGATGCGACTGAAGAAAAGGGGGAGAGAGCC
EST: gi|352765070|gb|FQ473718.1|FQ473718
EST:     TTTGAGCATCTAGGTTCCAGCGAACTTCACTTTCATTCTCTCTCATGGCG                         ATCGACAATCTTTTTAAAGATGATGCGACTGAAGAAAAGGGGGAGAGAGCC
genomic: TTTGAGCATCTAGGTTCCAGCGAACTTCACTTTCATTCTCTCTCATGGCGgtatgttgat ... aatgttgtagATCGACAATCTTTTTAAAGATGATGCGACTGAAGAAAAGGGGGAGAGAGCC
EST: gi|352773730|gb|FQ472512.1|FQ472512
EST:     TTTGAGCATCTAGGTTCCAGCGAACTTCACTTTCATTCTCTCTCATGGCG                         ATCGACAATCTTTTTAAAGATGATGCGACTGAAGAAAAGGGGGAGAGAGCC
genomic: TTTGAGCATCTAGGTTCCAGCGAACTTCACTTTCATTCTCTCTCATGGCGgtatgttgat ... aatgttgtagATCGACAATCTTTTTAAAGATGATGCGACTGAAGAAAAGGGGGAGAGAGCC
EST: gi|352777695|gb|FQ466748.1|FQ466748
EST:     TTTGAGCATCTAGGTTCCAGCGAACTTCACTTTCATTCTCTCTCATGGCG                         ATCGACAATCTTTTTAAAGATGATGCGACTGAAGAAAAGGGGGAGAGAGCC
genomic: TTTGAGCATCTAGGTTCCAGCGAACTTCACTTTCATTCTCTCTCATGGCGgtatgttgat ... aatgttgtagATCGACAATCTTTTTAAAGATGATGCGACTGAAGAAAAGGGGGAGAGAGCC
EST: gi|352781730|gb|FQ469028.1|FQ469028
EST:     TTTGAGCATCTAGGTTCCAGCGAACTTCACTTTCATTCTCTCTCATGGCG                         ATCGACAATCTTTTTAAAGATGATGCGACTGAAGAAAAGGGGGAGAGAGCC
genomic: TTTGAGCATCTAGGTTCCAGCGAACTTCACTTTCATTCTCTCTCATGGCGgtatgttgat ... aatgttgtagATCGACAATCTTTTTAAAGATGATGCGACTGAAGAAAAGGGGGAGAGAGCC
EST: gi|352777783|gb|FQ466836.1|FQ466836
EST:     TTTGAGCATCTAGGTTCCAGCGAACTTCACTTTCATTCTCTCTCATGGCG                         ATCGACAATCTTTTTAAAGATGATGCGACTGAAGAAAAGGGGGAGAGAGCC
genomic: TTTGAGCATCTAGGTTCCAGCGAACTTCACTTTCATTCTCTCTCATGGCGgtatgttgat ... aatgttgtagATCGACAATCTTTTTAAAGATGATGCGACTGAAGAAAAGGGGGAGAGAGCC