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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTCATTTTGTTTCCAAACAAGAAAAGTTCTATCCCCGCTGCACTCCAAGACATTCTGGTCCACAGTCCCGTGATACTCCACCAAAAAGAGgtgatctatagtgaccttgccattttagtttctgaatgcgttgtagcttctgatttatggcctatgttgtcatctaaatgttgtgcctaataacacatcttttgtttactggttccttcacctcag

Basic information

species Vitis vinifera
transcript Vv18s0001g00110.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g00110.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT1G42430.1 (Arabidopsis thaliana), 5'ss of exon 2
GTCTCATTTTGTTTCCAAACAAGAAAAGTTCTATCCCCGCTGCACTCCAAGACATTCTGGTCCACAGTCCCGTGATACTCCACCAAAAAGAGgtgatctatagtgaccttgccattttagtttctgaatgcgttgtagcttctgatttatggcctatgttgtcatctaaatgttgtgcctaataacacatcttttgtttactggttccttcacctcag
 ||||  ||| | || || ||||||||||||||||| || || |||||||| | | ||||||| ||||| ||||||||||| || ||||||||| |      || |   |   |||  | ||   |||  | |   | | | | | | | | | |  |  |      || | ||   ||   | |  || |  | ||                     
ATCTCGATTTTTGTCTAAGCAAGAAAAGTTCTATCCTCGTTGTACTCCAAGGCTTACTGGTCCTCAGTCTCGTGATACTCCTCCTAAAAGAGgtaacactacgtaaaagta--attgaaatt---gaaatcata--aacgtttaagtaaagacatgagaggatg---aactctttaaccctttgaatcacccgtggtgcgac----------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161710306|gb|FC059820.1|FC059820
EST:     CACTCCAAGACATTCTGGTCCACAGTCCCGTGATACTCCACCAAAAAGAG                         ACACTGGTATTGCAAATGAAAA
genomic: CACTCCAAGACATTCTGGTCCACAGTCCCGTGATACTCCACCAAAAAGAGgtgatctata ... ttcacctcagACACTGGTATTGCAAATGAAAA
EST: gi|294967101|gb|GW839976.1|GW839976
EST:     CACTCCAAGACATTCTGGTCCACAGTCCCGTGATACTCCACCAAAAAGAG                         ACACTGGTATTGCAAATGAAAAGGATTGGGGCATCAACTTATTAAGTGAAA
genomic: CACTCCAAGACATTCTGGTCCACAGTCCCGTGATACTCCACCAAAAAGAGgtgatctata ... ttcacctcagACACTGGTATTGCAAATGAAAAGGATTGGGGCATCAACTTATTAAGTGAAA
EST: gi|161709993|gb|FC060580.1|FC060580
EST:     CACTCCAAGACATTCTGGTCCACAGTCCCGTGATACTCCACCAAAAAGAG                         ACACTGGTATTGCAAATGAAAAGGATTGGGGCATCAACTTATTAAGTGAAA
genomic: CACTCCAAGACATTCTGGTCCACAGTCCCGTGATACTCCACCAAAAAGAGgtgatctata ... ttcacctcagACACTGGTATTGCAAATGAAAAGGATTGGGGCATCAACTTATTAAGTGAAA