1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GTAATACACCCATTTATAGTGCCTTCAACGTCTGTCTCTGTCTCGAAAATTAGAATTTGATTTTGTGAGCCAGCAATGAAGCATATTGAAGGATATTTGAgtacgtcttctctgcttctcttctctctgttttctcgtcactttttggttttttatttgaaaactttcctttttgattattcttgtttggtcactgcacg...
species | Vitis vinifera |
transcript | Vv17s0000g08990.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TAGAATTTGATTTTGTGAGCCAGCAATGAAGCATATTGAAGGATATTTGA GGGTCTCTCTGTTTCTCTCAGAGATGGGTAAGCTTTCCGGCGTCTTCTCCTEST: gi|161719375|gb|FC068291.1|FC068291
genomic: TAGAATTTGATTTTGTGAGCCAGCAATGAAGCATATTGAAGGATATTTGAgtacgtcttc ... ttttcaatagGGGTCTCTCTGTTTCTCTCAGAGATGGGTAAGCTTTCCGGCGTCTTCTCCT
EST: TAGAATTTGATTTTGTGAGCCAGCAATGAAGCATATTGAAGGATATTTGA GGGTCTCTCTGTTTCTCTCAGAGATGGGTAAGCTTTCCGGCGTCTTCTCCTEST: gi|161708015|gb|FC057795.1|FC057795
genomic: TAGAATTTGATTTTGTGAGCCAGCAATGAAGCATATTGAAGGATATTTGAgtacgtcttc ... ttttcaatagGGGTCTCTCTGTTTCTCTCAGAGATGGGTAAGCTTTCCGGCGTCTTCTCCT
EST: TAGAATTTGATTTTGTGAGCCAGCAATGAAGCATATTGAAGGATATTTGA GGGTCTCTCTGTTTCTCTCAGAGATGGGTAAGCTTTCCGGCGTCTTCTCCTEST: gi|71862432|gb|DT011487.1|DT011487
genomic: TAGAATTTGATTTTGTGAGCCAGCAATGAAGCATATTGAAGGATATTTGAgtacgtcttc ... ttttcaatagGGGTCTCTCTGTTTCTCTCAGAGATGGGTAAGCTTTCCGGCGTCTTCTCCT
EST: TAGAATTTGATTTTGTGAGCCAGCAATGAAGCATATTGAAGGATATTTGA GGGTCTCTCTGTTTCTCTCAGAGATGGGTAAGCTTTCCGGCGTCTTCTCCTEST: gi|71871391|gb|DT020446.1|DT020446
genomic: TAGAATTTGATTTTGTGAGCCAGCAATGAAGCATATTGAAGGATATTTGAgtacgtcttc ... ttttcaatagGGGTCTCTCTGTTTCTCTCAGAGATGGGTAAGCTTTCCGGCGTCTTCTCCT
EST: TAGAATTTGATTTTGTGAGCCAGCAATGAAGCATATTGAAGGATATTTGA GGGTCTCTCTGTTTCTCTCAGAGATGGGTAAGCTTTCCGGCGTCTTCTCCT
genomic: TAGAATTTGATTTTGTGAGCCAGCAATGAAGCATATTGAAGGATATTTGAgtacgtcttc ... ttttcaatagGGGTCTCTCTGTTTCTCTCAGAGATGGGTAAGCTTTCCGGCGTCTTCTCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTAATACACCCATTTATAGTGCCTTCAACGTCTGTCTCTGTCTCGAAAATTAGAATTTGATTTTGTGAGCCAGCAATGAAGCATATTGAAGGATATTTGAgtacgtcttctctgcttctcttctctctgttttctcgtcactttttggttttttatttgaaaactttcctttttgattattcttgtttggtcactgcacg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgaaaa