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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGTAAAAATTATTTACATGTGCACCCCATGTTCCTTCATTCAAATGCCACTTCACATAAGTGGGCTTTTGGTGgtacatctacctttttgttttatttatttaattttttatttttttattttagtggcctcatgtattacacttttttgtacattaaatgatgtttattagagtttgcaatttctataatctcttatatgccctatttgttgccttctttttgcag

Basic information

species Vitis vinifera
transcript Vv17s0000g08750.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0000g08750.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA04G35870.1 (Glycine max), 5'ss of exon 3
ATGGTAAAAATTATTTACATGTGCACCCCATGTTCCTTCATTCAAATGCCACTTCACATAAGTGGGCTTTTGGTGgtacatctacctttttgttttatttatttaattttttattttt--ttattttagt-ggcctcatgtattacacttttttgtacattaaa--tgatgtttattagagtttgcaatttctataatctcttatatgccctatttgttgccttctttttgcag
|||  ||||||||| ||||||||||||||||||||||||| |||||||| ||||| ||||||||||| ||||||||||  |    |||    | |   | |  |    | |||||| |   || |||| | | || | | | | | | |||||  |    | |   |  | ||| ||   |||||||                                               
ATGCCAAAAATTATCTACATGTGCACCCCATGTTCCTTCACTCAAATGCAACTTCGCATAAGTGGGCATTTGGTGgtatgtt---cttaccatctgtataaacttgcgtcttatttatgactactttaattgaccacctttgtgatattttttcatgagctgatctttttctttgtttctgtttgcag----------------------------------------------

upper sequence: Vv17s0000g08750.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA17G09550.1 (Glycine max), 5'ss of exon 2
ATGGTAAAAATTATTTACATGTGCACCCCATGTTCCTTCATTCAAATGCCACTTCACATAAGTGGGCTTTTGGTGgtacatctacctttttgttttatttatttaattttttatttttttattttagtggcctcatgtattacacttttttgtacattaaatgatgtttattagagtttgcaatttctataatctcttatatgccctatttgttgccttctttttgcag
||  |  ||| || || ||||| |||||  | |||||||| |||||||| ||||||||||||||||  ||||||||||  |      |  || ||||||||   |  || || || || |   |   |   |    | |   |  |||||| | | ||   |      | ||| | |     |||  | |  | |  | | |||                         
ATACTGGAAACTACTTGCATGTTCACCCTTTCTTCCTTCACTCAAATGCAACTTCACATAAGTGGGTATTTGGTGgtatgttc----tagtggtttattta---agcttatttttcttctcaatggttcttccagagaacctcttttttttcttcttttcttttcacgtgttaaaat-----attcttctgtttttctgtctgcag-----------------------

upper sequence: Vv17s0000g08750.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT1G19100.1 (Arabidopsis thaliana), 5'ss of exon 3
ATGGTAAAAATTATTTACATGTGCACCCCATGTTCCTTCATTCAAATGCCACTTCACATAAGTGGGCTTTTGGTGgtacatctacctttttgttttatttatttaattttttatttttttattttagtg-gcctcatgtattacacttt-tttgtacattaaatgatgtttattagagtttgcaatttctataatctcttatatgccctatttgttgccttctttttgcag
|||| ||||||||| | ||||||||||| ||||||||||| || ||||| || |||||||| ||||||||||| ||||    ||     || |  |  || | || | | |||||      |||||    | || || |  | | || | | || |                                                                           
ATGGAAAAAATTATCTTCATGTGCACCCTATGTTCCTTCACTCCAATGCTACCTCACATAAATGGGCTTTTGGAGgtatgcttaaacaattttccttcttttgta-tgtgttattcaagcgttttaacaagacttatttgcttctctctatctgcag--------------------------------------------------------------------------