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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTGGACATTAAAAACTGAGGCTATCTACTTCACCATCTCGGATCATCACATAATCTTGTGGATCTCTTTGAGGACAgtatgttgttgtttctctaatcccatatgttggtttcttttatgctcaaccattatatttctaatttcacatgaaatttaggggaatatagtgttctgaaaattttgatttctttgatggatttgtag

Basic information

species Vitis vinifera
transcript Vv17s0000g07960.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32271062|gb|CD720221.1|CD720221
EST:     ACTTCACCATCTCGG---AT--CATAATCTTGTGGATCTCTTTGAGGACA                         CTGGTTGGGAAAATTTTAAGGATAAAAATGTCTTCTCCAAGCAAGAGGAGA
genomic: ACTTCACCATCTCGGATCATCACATAATCTTGTGGATCTCTTTGAGGACAgtatgttgtt ... ggatttgtagCTGGTTGGGAAAATTTTAAGGATAAAAATGTCTTCTCCAAGCAAGAGGAGA
EST: gi|32271807|gb|CD720966.1|CD720966
EST:     ACTTCACCATCTCGG---AT--CATAATCTTGTGGATCTCTTTGAGGACA                         CTGGTTGGGAAAATTTTAAGGATAAAAATGTCTTCTCCAAGCAAGAGGAGA
genomic: ACTTCACCATCTCGGATCATCACATAATCTTGTGGATCTCTTTGAGGACAgtatgttgtt ... ggatttgtagCTGGTTGGGAAAATTTTAAGGATAAAAATGTCTTCTCCAAGCAAGAGGAGA
EST: gi|32272372|gb|CD721531.1|CD721531
EST:     ACTTCACCATCTCGG---AT--CATAATCTTGTGGATCTCTTTGAGGACA                         CTGGTTGGGAAAATTTTAAGGATAAAAATGTCTTCTCCAAGCAAGAGGAGA
genomic: ACTTCACCATCTCGGATCATCACATAATCTTGTGGATCTCTTTGAGGACAgtatgttgtt ... ggatttgtagCTGGTTGGGAAAATTTTAAGGATAAAAATGTCTTCTCCAAGCAAGAGGAGA
EST: gi|30327528|gb|CD010790.1|CD010790
EST:     ACTTCACCATCTCGG---AT--CATAATCTTGTGGATCTCTTTGAGGACA                         CTGGTTGGGAAAATTTTAAGGATAAAAATGTCTTCTCCAAGCAAGAGGAGA
genomic: ACTTCACCATCTCGGATCATCACATAATCTTGTGGATCTCTTTGAGGACAgtatgttgtt ... ggatttgtagCTGGTTGGGAAAATTTTAAGGATAAAAATGTCTTCTCCAAGCAAGAGGAGA
EST: gi|32272391|gb|CD721550.1|CD721550
EST:     ACTTCACCATCTCGG---AT--CATAATCTTGTGGATCTCTTTGAGGACA                         CTGGTTGGGAAAATTTTAAGGATAAAAATGTCTTCTCCAAGCAAGAGGAGA
genomic: ACTTCACCATCTCGGATCATCACATAATCTTGTGGATCTCTTTGAGGACAgtatgttgtt ... ggatttgtagCTGGTTGGGAAAATTTTAAGGATAAAAATGTCTTCTCCAAGCAAGAGGAGA
EST: gi|32271578|gb|CD720737.1|CD720737
EST:     ACTTCACCATCTCGG---AT--CATAATCTTGTGGATCTCTTTGAGGACA                         CTGGTTGGGAAAATTTTAAGGATAAAAATGTCTTCTCCAAGCAAGAGGAGA
genomic: ACTTCACCATCTCGGATCATCACATAATCTTGTGGATCTCTTTGAGGACAgtatgttgtt ... ggatttgtagCTGGTTGGGAAAATTTTAAGGATAAAAATGTCTTCTCCAAGCAAGAGGAGA
EST: gi|32272363|gb|CD721522.1|CD721522
EST:     ACTTCACCATCTCGG---AT--CATAATCTTGTGGATCTCTTTGAGGACA                         CTGGTTGGGAAAATTTTAAGGATAAAAATGTCTTCTCCAAGCAAGAGGAGA
genomic: ACTTCACCATCTCGGATCATCACATAATCTTGTGGATCTCTTTGAGGACAgtatgttgtt ... ggatttgtagCTGGTTGGGAAAATTTTAAGGATAAAAATGTCTTCTCCAAGCAAGAGGAGA
EST: gi|30324813|gb|CD008075.1|CD008075
EST:     ACTTCACCATCTCGG---AT--CATAATCTTGTGGATCTCTTTGAGGACA                         CTGGTTGGGAAAATTTTAAGGATAAAAATGTCTTCTCCAAGCAAGAGGAGA
genomic: ACTTCACCATCTCGGATCATCACATAATCTTGTGGATCTCTTTGAGGACAgtatgttgtt ... ggatttgtagCTGGTTGGGAAAATTTTAAGGATAAAAATGTCTTCTCCAAGCAAGAGGAGA
EST: gi|32270967|gb|CD720126.1|CD720126
EST:     ACTTCACCATCTCGG---AT--CATAATCTTGTGGATCTCTTTGAGGACA                         CTGGTTGGGAAAATTTTAAGGATAAAAATGTCTTCTCCAAGCAAGAGGAGA
genomic: ACTTCACCATCTCGGATCATCACATAATCTTGTGGATCTCTTTGAGGACAgtatgttgtt ... ggatttgtagCTGGTTGGGAAAATTTTAAGGATAAAAATGTCTTCTCCAAGCAAGAGGAGA