Sequence
atgc intronic sequence ATGC exonic sequenceCCCAATTGGGGGAGACACGATTTCTGTAACAAGTGGTGTTGTATCAAGAATAGAGATCCTATCTTATGTTCATGGGTCCACTGAGCTTCTGGGTTTACAGgtcatggggtcacatttctcctttttctcttttagttattgttggcttgttgatccatttttctgatgtctcctattcttgatggttttacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g07900.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os06g12780.1 (Oryza sativa), 5'ss of exon 2
CCCAATTGGGGGAGACACGATTTCTGTAACAAGTGGTGTTGTATCAAGAATAGAGATCCTATCTTATGTTCATGGGTCCACTGAGCTTCTGGGTTTACAGgtcatggggtcac-atttctcctttttctcttttagttattgttggcttgttg-atccatttttctgatgtctc-------ctattcttgatggttttacag----------------------------------------
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CCCAATTGGAGGAGACACGATCTCAGTCACAAGTGGTGTTGTATCTAGAATAGAGATACTTTCATATGTTCATGGTTCAACGGAGCTTCTAGGATTGCAGgtttttctcttaagatctttgcatgcttttgattgtctatattttgcatattgtagacatagtttttacttctctttggaattatttctaataatctcttaacctgggagcatacttaagttttcactgtttcatggaacag
upper sequence: Vv17s0000g07900.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA05G01930.1 (Glycine max), 5'ss of exon 2
CCCAATTGGGGGAGACACGATTTCTGTAACAAGTGGTGTTGTATCAAGAATAGAGATCCTATCTTATGTTCATGGGTCCACTGAGCTTCTGGGTTTACAGgtcatggggtcac-atttctcctttttctcttttagttattgttggcttgttgatccatttttctgatgtctcctattcttgatggttttacag-------
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CCCAATTGGTGGAGACACTATCTCCGTCACCAGTGGTGTTGTATCACGCATTGAGATTCTATCTTATGTCCATGGTTCTACAGAACTTCTAGGTTTACAGgttaggttgaaatgattagtcttccattgttattcgttatcatttaatgtctgtttggaggagcttatggggagcttatttga-gcttataaaaatagctg
upper sequence: Vv17s0000g07900.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA17G09970.1 (Glycine max), 5'ss of exon 2
CCCAATTGGGGGAGACACGATTTCTGTAACAAGTGGTGTTGTATCAAGAATAGAGATCCTATCTTATGTTCATGGGTCCACTGAGCTTCTGGGTTTACAGgtca---tggggtcac-atttctcctttttctcttttagttatt-gttggcttgttgatccatttttctgatgtctcctattcttgatg--gttttacag
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CCCAATTGGTGGAGACACTATCTCAGTGACCAGTGGTGTTGTATCGCGCATTGAGATTTTATCTTATGTCCATGGTTCTACAGAACTTCTAGGTTTACAGgttaggttgaaatgattagtcttccattgttattcttaatcatttaatgtctgtttggaagagcttatgggaagctaatagaaaagctgaagattctcatMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71854817|gb|DT003872.1|DT003872EST: TAGAGATCCTATCTTATGTTCATGGGTCCACTGAGCTTCTGGGTTTACAG ATAGATGCTGCTATAAACTCTGGAAATTCTGGTGGGCCTGCCTTCAATGAG
genomic: TAGAGATCCTATCTTATGTTCATGGGTCCACTGAGCTTCTGGGTTTACAGgtcatggggt ... ggttttacagATAGATGCTGCTATAAACTCTGGAAATTCTGGTGGGCCTGCCTTCAATGAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CCCAATTGGGGGAGACACGATTTCTGTAACAAGTGGTGTTGTATCAAGAATAGAGATCCTATCTTATGTTCATGGGTCCACTGAGCTTCTGGGTTTACAGgtcatggggtcacatttctcctttttctcttttagttattgttggcttgttgatccatttttctgatgtctcctattcttgatggttttacag
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT