Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATGAGAGATTTTAAGAGGTTGCAACAGGACCCCCCTGCCGGCATCAGTGGAGCTCCCCAAGACAACAATATAATGCTTTGGAATGCTGTTATATTTGGgtaatgggcaacaaaattcatgaaaactgttattgtgtttgcttatgttatgtgtttatttatttgccttttactttctcagtatgtttaagtatggttggataagccatttctggtttcttttctgatttggattgcag

Basic information

species Vitis vinifera
transcript Vv17s0000g05820.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0000g05820.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os05g08960.2 (Oryza sativa), 5'ss of exon 2
TGATGAGAGATTTTAAGAGGTTGCAACAGGACCCCCCTGCCGGCATCAGTGGAGCTCCCCAAGACAACAATATAATGCTTTGGAATGCTGTTATATTTGGgtaatgggcaacaaaattcatgaaaac-tgttattgtgtttgcttatgttatgtgtttatttatttgccttttactttctcagtatgtttaagtatggttggataagccatttctggtttcttttctgatttggattgcag
||||||| ||||| ||  |  ||   ||||| || || || ||||| ||||| || || || ||||||||||||||||||||||||||||| || |||||||||  ||    | | || |   | |  | |||||   || | || | || ||      | || ||   | | | ||      | | ||  ||                                                
TGATGAGGGATTTCAAACGACTGATGCAGGATCCTCCAGCTGGCATAAGTGGGGCCCCACAGGACAACAATATAATGCTTTGGAATGCTGTAATTTTTGGgtaa--ggtgttagacttaagagatatgttttattcctttcggttttattttgatccattatacttagttgtcaattatgtcttgttttgcag------------------------------------------------

upper sequence: Vv17s0000g05820.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G110983_T02 (Zea mays), 5'ss of exon 2
TGATGAGAGATTTTAAGAGGTTGCAACAGGACCCCCCTGCCGGCATCAGTGGAGCTCCCCAAGACAACAATATAATGCTTTGGAATGCTGTTATATTTGGgtaatgggcaacaaaattcatgaaaactgttattgtgtttgcttatgttatgtgtttatttatttgccttttactttctcagtatgtttaagtatggttggataagccatttctggtttcttttctgatttggattgcag
||||||| ||||| ||| |||||   |||||||| || |||||||| ||||| || || || || ||||| |||||||| ||||||||||| |||||||||||    |||    ||| |       |  || |      | ||||  ||   |  | ||  ||||| | |   ||||     |||| |||  | |  |                                          
TGATGAGGGATTTCAAGCGGTTGATGCAGGACCCTCCGGCCGGCATAAGTGGCGCCCCGCAGGATAACAACATAATGCTGTGGAATGCTGTCATATTTGGgtatgatgcag---aatccccccgcccccttttccccacttcttagtttgaattgtaat--atttgacatcgtctttg--gatatgcttatttcttttacag--------------------------------------

upper sequence: Vv17s0000g05820.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA04G34170.2 (Glycine max), 5'ss of exon 2
TGATGAGAGATTTTAAGAGGTTGCAACAGGACCCCCCTGCCGGCATCAGTGGAGCTCCCCAAGACAACAATATAATGCTTTGGAATGCTGTTATATTTGGgtaatgggcaacaaaattcatgaaaactgttattgtgtttgcttatgttatgtgtttatttatttgccttttactttctcagtatgtttaagtatggttggataagccatttctggtttcttttctgatttggattgcag
|||||||||| || |||||| ||||||| ||||| ||||| || ||||| || || ||||| || ||||| |||||||| ||||||||||| |||||||||| |   | |   ||||||   | |  |   ||  |||||   | | |  |   ||  |     |   ||||| ||||| |   ||||||| ||  | ||||||||  |||| |||||||||  ||| ||||||||||||
TGATGAGAGACTTCAAGAGGCTGCAACAAGACCCGCCTGCAGGGATCAGCGGTGCCCCCCAGGATAACAACATAATGCTGTGGAATGCTGTCATATTTGGgtgagttgaattcaaattcgatataggtccaatgttgttttaatttatagtcaattggtca--ctattttttaatttcttatgttgtttaattactgatggataagtgatttttggtttcttgactgctttggattgcag

upper sequence: Vv17s0000g05820.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA17G10640.1 (Glycine max), 5'ss of exon 2
TGATGAGAGATTTTAAGAGGTTGCAACAGGACCCCCCTGCCGGCATCAGTGGAGCTCCCCAAGACAACAATATAATGCTTTGGAATGCTGTTATATTTGGgtaatgggcaacaaaattcatgaaaactg---ttattgtgtttgcttatgttatgtgtttattt--atttgccttttactttct-----cagtatgtttaagtatggttggataagccatttctggtttcttttctgatttggattgcag
| ||||||||||| |||||| ||||||| ||||| ||||| || |||||||| || || || || ||||| || ||||| ||||||||||| |||||||||| |   | |   |||||    |||  |     | || || || |||   | || |  ||| ||   |||   ||||| ||| |     || | ||| ||||||||| ||||||||| ||||||| |||||| |||| ||||||||||||
TCATGAGAGATTTCAAGAGGCTGCAACAAGACCCTCCTGCAGGAATCAGTGGCGCCCCTCAGGATAACAACATCATGCTGTGGAATGCTGTCATATTTGGgtgagctgaattgaaattggataaagataaaactgttctgcttacttgaataatatagttactttgttttttattttattttttttccacactttgtgtaagtatggatggataagcaatttctgctttcttgtctgctttggattgcag

upper sequence: Vv17s0000g05820.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA17G10640.1 (Glycine max), 5'ss of exon 2
TGATGAGAGATTTTAAGAGGTTGCAACAGGACCCCCCTGCCGGCATCAGTGGAGCTCCCCAAGACAACAATATAATGCTTTGGAATGCTGTTATATTTGGgtaatgggcaacaaaattcatgaaaactg---ttattgtgtttgcttatgttatgtgtttattt--atttgccttttactttct-----cagtatgtttaagtatggttggataagccatttctggtttcttttctgatttggattgcag
| ||||||||||| |||||| ||||||| ||||| ||||| || |||||||| || || || || ||||| || ||||| ||||||||||| |||||||||| |   | |   |||||    |||  |     | || || || |||   | || |  ||| ||   |||   ||||| ||| |     || | ||| ||||||||| ||||||||| ||||||| |||||| |||| ||||||||||||
TCATGAGAGATTTCAAGAGGCTGCAACAAGACCCTCCTGCAGGAATCAGTGGCGCCCCTCAGGATAACAACATCATGCTGTGGAATGCTGTCATATTTGGgtgagctgaattgaaattggataaagataaaactgttctgcttacttgaataatatagttactttgttttttattttattttttttccacactttgtgtaagtatggatggataagcaatttctgctttcttgtctgctttggattgcag

upper sequence: Vv17s0000g05820.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA17G10640.3 (Glycine max), 5'ss of exon 2
TGATGAGAGATTTTAAGAGGTTGCAACAGGACCCCCCTGCCGGCATCAGTGGAGCTCCCCAAGACAACAATATAATGCTTTGGAATGCTGTTATATTTGGgtaatgggcaacaaaattcatgaaaactgttattgtgtttgcttatgttatgtgtttattta-tttgccttttactttctcagtatgtttaagtatggttggataagccatttctggtttcttttctgatttggattgcag
| ||||||||||| |||||| ||||||| ||||| ||||| || |||||||| || || || || ||||| || ||||| ||||||||||| |||||||||| |   | |   |||||    |||  |   | ||| | ||||||  | |    | || ||| ||||  ||||| ||| |   | |     | | ||  |                                         
TCATGAGAGATTTCAAGAGGCTGCAACAAGACCCTCCTGCAGGAATCAGTGGCGCCCCTCAGGATAACAACATCATGCTGTGGAATGCTGTCATATTTGGgtgagctgaattgaaattggataaagataaaactgt-tctgcttacttgaataatatagttactttgttttttattttattttttttccacactttgtgta----------------------------------------

upper sequence: Vv17s0000g05820.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA05G01270.1 (Glycine max), 5'ss of exon 2
TGATGAGAGATTTTAAGAGGTTGCAACAGGACCCCCCTGCCGGCATCAGTGGAGCTCCCCAAGACAACAATATAATGCTTTGGAATGCTGTTATATTTGGgtaatgggcaacaaaattc-atgaaaactg-ttattgtgtttgcttatgttatgtgtttat-ttatttgccttttactttctc----agtatgtttaagtatggttggataagccatttctggtttcttttctgatttggattgcag
| ||||||||||| |||||| ||||||| ||||| ||||| || ||||| || || || || || ||||| |||||||| ||||| ||||| |||||||||| |   | |   |||||  || || |     |||| || || |||   | || |  | ||  |  |    ||||| ||| ||    | | ||| ||||||||| ||||||||| ||||||| |||||| |||| ||||||||||||
TCATGAGAGATTTCAAGAGGCTGCAACAAGACCCGCCTGCAGGAATCAGCGGGGCACCTCAGGATAACAACATAATGCTGTGGAACGCTGTCATATTTGGgtgagttgaattgaaattggataaagagaaactattctgcttacttgaataatatagtcatactgctattattttattttttcccacactttgtgtaagtatggatggataagcaatttctgctttcttgtctgctttggattgcag

upper sequence: Vv17s0000g05820.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA05G01270.1 (Glycine max), 5'ss of exon 2
TGATGAGAGATTTTAAGAGGTTGCAACAGGACCCCCCTGCCGGCATCAGTGGAGCTCCCCAAGACAACAATATAATGCTTTGGAATGCTGTTATATTTGGgtaatgggcaacaaaattc-atgaaaactg-ttattgtgtttgcttatgttatgtgtttat-ttatttgccttttactttctc----agtatgtttaagtatggttggataagccatttctggtttcttttctgatttggattgcag
| ||||||||||| |||||| ||||||| ||||| ||||| || ||||| || || || || || ||||| |||||||| ||||| ||||| |||||||||| |   | |   |||||  || || |     |||| || || |||   | || |  | ||  |  |    ||||| ||| ||    | | ||| ||||||||| ||||||||| ||||||| |||||| |||| ||||||||||||
TCATGAGAGATTTCAAGAGGCTGCAACAAGACCCGCCTGCAGGAATCAGCGGGGCACCTCAGGATAACAACATAATGCTGTGGAACGCTGTCATATTTGGgtgagttgaattgaaattggataaagagaaactattctgcttacttgaataatatagtcatactgctattattttattttttcccacactttgtgtaagtatggatggataagcaatttctgctttcttgtctgctttggattgcag

upper sequence: Vv17s0000g05820.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: PP1S219_106V6.1 (Physcomitrella patens), 5'ss of exon 1
TGATGAGAGATTTTAAGAGGTTGCAACAGGACCCCCCTGCCGGCATCAGTGGAGCTCCCCAAGACAACAATATAATGCTTTGGAATGCTGTTATATTTGGgtaatgggcaacaaaattcatgaaaactgttattgtgtttgcttatgttatgtgtttattt---atttgccttttactttctcagtatgtttaagtat-ggttggataagccatttctggtttcttttctgatttggattgcag
||||| | || || ||| | |||||||| || || || ||||||||||| || ||||| || ||||||||||| ||||| ||||||||||| ||||| |||||| |     |     ||         ||| || ||||   || |||   ||  |  |     ||| |||             | | ||   ||| | ||||                                         
TGATGCGTGACTTCAAGCGCTTGCAACATGATCCTCCGGCCGGCATCAGCGGCGCTCCGCAGGACAACAATATCATGCTGTGGAATGCTGTGATATTCGGgtaacgaagtgc----ctccctggtttcgtt-ttttgttcaattgtgtccggtcgtggtgcggaattcgccgggcgtgggaggcgcacgtcggagtgtcggtttt---------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351044280|gb|FQ447634.1|FQ447634
EST:     GGAGCTCCCCAAGACAACAATATAATGCTTTGGAATGCTGTTATATTTGG                         TCCAGATGACACTCCATGGGATGGAG
genomic: GGAGCTCCCCAAGACAACAATATAATGCTTTGGAATGCTGTTATATTTGGgtaatgggca ... tggattgcagTCCAGATGACACTCCATGGGATGGAG
EST: gi|349823648|gb|FQ415058.1|FQ415058
EST:     GGAGCTCCCCAAGACAACAATATAATGCTTTGGAATGCTGTTATATTTGG                         TCCAGATGACACTCCATGGGATGGAG
genomic: GGAGCTCCCCAAGACAACAATATAATGCTTTGGAATGCTGTTATATTTGGgtaatgggca ... tggattgcagTCCAGATGACACTCCATGGGATGGAG
EST: gi|351029672|gb|FQ427512.1|FQ427512
EST:     GGAGCTCCCCAAGACAACAATATAATGCTTTGGAATGCTGTTATATTTGG                         TCCAGATGACACTCCATGGGATGGAG
genomic: GGAGCTCCCCAAGACAACAATATAATGCTTTGGAATGCTGTTATATTTGGgtaatgggca ... tggattgcagTCCAGATGACACTCCATGGGATGGAG
EST: gi|110726002|gb|EE103053.1|EE103053
EST:     GGAGCTCCCCAAGACAACAATATAATGCTTTGGAATGCTGTTATATTTGG                         TCCAGATGACACTCCATGGGATGGAG
genomic: GGAGCTCCCCAAGACAACAATATAATGCTTTGGAATGCTGTTATATTTGGgtaatgggca ... tggattgcagTCCAGATGACACTCCATGGGATGGAG
EST: gi|110426330|gb|EC992735.1|EC992735
EST:     GGAGCTCCCCAAGACAACAATATAATGCTTTGGAATGCTGTTATATTTGG                         TCCAGATGACACTCCATGGGATGGAG
genomic: GGAGCTCCCCAAGACAACAATATAATGCTTTGGAATGCTGTTATATTTGGgtaatgggca ... tggattgcagTCCAGATGACACTCCATGGGATGGAG
EST: gi|349812793|gb|FQ410435.1|FQ410435
EST:     GGAGCTCCCCAAGACAACAATATAATGCTTTGGAATGCTGTTATATTTGG                         TCCAGATGACACTCCATGGGATGGAG
genomic: GGAGCTCCCCAAGACAACAATATAATGCTTTGGAATGCTGTTATATTTGGgtaatgggca ... tggattgcagTCCAGATGACACTCCATGGGATGGAG
EST: gi|351040450|gb|FQ434583.1|FQ434583
EST:     GGAGCTCCCCAAGACAACAATATAATGCTTTGGAATGCTGTTATATTTGG                         TCCAGATGACACTCCATGGGATGGAG
genomic: GGAGCTCCCCAAGACAACAATATAATGCTTTGGAATGCTGTTATATTTGGgtaatgggca ... tggattgcagTCCAGATGACACTCCATGGGATGGAG
EST: gi|351033819|gb|FQ447857.1|FQ447857
EST:     GGAGCTCCCCAAGACAACAATATAATGCTTTGGAATGCTGTTATATTTGG                         TCCAGATGACACTCCATGGGATGGAG
genomic: GGAGCTCCCCAAGACAACAATATAATGCTTTGGAATGCTGTTATATTTGGgtaatgggca ... tggattgcagTCCAGATGACACTCCATGGGATGGAG
EST: gi|351024032|gb|FQ423455.1|FQ423455
EST:     GGAGCTCCCCAAGACAACAATATAATGCTTTGGAATGCTGTTATATTTGG                         TCCAGATGACACTCCATGGGATGGAG
genomic: GGAGCTCCCCAAGACAACAATATAATGCTTTGGAATGCTGTTATATTTGGgtaatgggca ... tggattgcagTCCAGATGACACTCCATGGGATGGAG
EST: gi|349830568|gb|FQ416866.1|FQ416866
EST:     GGAGCTCCCCAAGACAACAATATAATGCTTTGGAATGCTGTTATATTTGG                         TCCAGATGACACTCCATGGGATGGAG
genomic: GGAGCTCCCCAAGACAACAATATAATGCTTTGGAATGCTGTTATATTTGGgtaatgggca ... tggattgcagTCCAGATGACACTCCATGGGATGGAG
EST: gi|351031294|gb|FQ445319.1|FQ445319
EST:     GGAGCTCCCCAAGACAACAATATAATGCTTTGGAATGCTGTTATATTTGG                         TCCAGATGACACTCCATGGGATGGAG
genomic: GGAGCTCCCCAAGACAACAATATAATGCTTTGGAATGCTGTTATATTTGGgtaatgggca ... tggattgcagTCCAGATGACACTCCATGGGATGGAG
EST: gi|351014290|gb|FQ437292.1|FQ437292
EST:     GGAGCTCCCCAAGACAACAATATAATGCTTTGGAATGCTGTTATATTTGG                         TCCAGATGACACTCCATGGGATGGAG
genomic: GGAGCTCCCCAAGACAACAATATAATGCTTTGGAATGCTGTTATATTTGGgtaatgggca ... tggattgcagTCCAGATGACACTCCATGGGATGGAG
EST: gi|110731799|gb|EE106527.1|EE106527
EST:     GGAGCTCCCCAAGACAACAATATAATGCTTTGGAATGCTGTTATATTTGG                         TCCAGATGACACTCCATGGGATGGAG
genomic: GGAGCTCCCCAAGACAACAATATAATGCTTTGGAATGCTGTTATATTTGGgtaatgggca ... tggattgcagTCCAGATGACACTCCATGGGATGGAG
EST: gi|349826891|gb|FQ418982.1|FQ418982
EST:     GGAGCTCCCCAAGACAACAATATAATGCTTTGGAATGCTGTTATATTTGG                         TCCAGATGACACTCCATGGGATGGAG
genomic: GGAGCTCCCCAAGACAACAATATAATGCTTTGGAATGCTGTTATATTTGGgtaatgggca ... tggattgcagTCCAGATGACACTCCATGGGATGGAG
EST: gi|351035318|gb|FQ459585.1|FQ459585
EST:     GGAGCTCCCCAAGACAACAATATAATGCTTTGGAATGCTGTTATATTTGG                         TCCAGATGACACTCCATGGGATGGAG
genomic: GGAGCTCCCCAAGACAACAATATAATGCTTTGGAATGCTGTTATATTTGGgtaatgggca ... tggattgcagTCCAGATGACACTCCATGGGATGGAG
EST: gi|110700261|gb|EE078097.1|EE078097
EST:     GGAGCTCCCCAAGACAACAATATAATGCTTTGGAATGCTGTTATATTTGG                         TCCAGATGACACTCCATGGGATGGAG
genomic: GGAGCTCCCCAAGACAACAATATAATGCTTTGGAATGCTGTTATATTTGGgtaatgggca ... tggattgcagTCCAGATGACACTCCATGGGATGGAG
EST: gi|110421523|gb|EC987821.1|EC987821
EST:     GGAGCTCCCCAAGACAACAATATAATGCTTTGGAATGCTGTTATATTTGG                         TCCAGATGACACTCCATGGGATGGAG
genomic: GGAGCTCCCCAAGACAACAATATAATGCTTTGGAATGCTGTTATATTTGGgtaatgggca ... tggattgcagTCCAGATGACACTCCATGGGATGGAG
EST: gi|349824373|gb|FQ417760.1|FQ417760
EST:     GGAGCTCCCCAAGACAACAATATAATGCTTTGGAATGCTGTTATATTTGG                         TCCAGATGACACTCCATGGGATGGAG
genomic: GGAGCTCCCCAAGACAACAATATAATGCTTTGGAATGCTGTTATATTTGGgtaatgggca ... tggattgcagTCCAGATGACACTCCATGGGATGGAG
EST: gi|351014644|gb|FQ437646.1|FQ437646
EST:     GGAGCTCCCCAAGACAACAATATAATGCTTTGGAATGCTGTTATATTTGG                         TCCAGATGACACTCCATGGGATGGAG
genomic: GGAGCTCCCCAAGACAACAATATAATGCTTTGGAATGCTGTTATATTTGGgtaatgggca ... tggattgcagTCCAGATGACACTCCATGGGATGGAG
EST: gi|351044244|gb|FQ447598.1|FQ447598
EST:     GGAGCTCCCCAAGACAACAATATAATGCTTTGGAATGCTGTTATATTTGG                         TCCAGATGACACTCCATGGGATGGAG
genomic: GGAGCTCCCCAAGACAACAATATAATGCTTTGGAATGCTGTTATATTTGGgtaatgggca ... tggattgcagTCCAGATGACACTCCATGGGATGGAG
EST: gi|110361377|gb|EC924844.1|EC924844
EST:     GGAGCTCCCCAAGACAACAATATAATGCTTTGGAATGCTGTTATATTTGG                         TCCAGATGACACTCCATGGGATGGAG
genomic: GGAGCTCCCCAAGACAACAATATAATGCTTTGGAATGCTGTTATATTTGGgtaatgggca ... tggattgcagTCCAGATGACACTCCATGGGATGGAG
EST: gi|351013685|gb|FQ433837.1|FQ433837
EST:     GGAGCTCCCCAAGACAACAATATAATGCTTTGGAATGCTGTTATATTTGG                         TCCAGATGACACTCCATGGGATGGAG
genomic: GGAGCTCCCCAAGACAACAATATAATGCTTTGGAATGCTGTTATATTTGGgtaatgggca ... tggattgcagTCCAGATGACACTCCATGGGATGGAG
EST: gi|349823308|gb|FQ402507.1|FQ402507
EST:     GGAGCTCCCCAAGACAACAATATAATGCTTTGGAATGCTGTTATATTTGG                         TCCAGATGACACTCCATGGGATGGAG
genomic: GGAGCTCCCCAAGACAACAATATAATGCTTTGGAATGCTGTTATATTTGGgtaatgggca ... tggattgcagTCCAGATGACACTCCATGGGATGGAG
EST: gi|110389048|gb|EC953859.1|EC953859
EST:     GTTATATTTGG                         TCCAGATGACACTCCATGGGATGGAG
genomic: GTTATATTTGGgtaatgggca ... tggattgcagTCCAGATGACACTCCATGGGATGGAG
EST: gi|351016912|gb|FQ424339.1|FQ424339
EST:     GGAGCTCCCCAAGACAACAATATAATGCTTTGGAATGCTGTTATATTTGG                         TCCAGATGACACTCCATGGGATGGAG
genomic: GGAGCTCCCCAAGACAACAATATAATGCTTTGGAATGCTGTTATATTTGGgtaatgggca ... tggattgcagTCCAGATGACACTCCATGGGATGGAG
EST: gi|349829768|gb|FQ421286.1|FQ421286
EST:     GGAGCTCCCCAAGACAACAATATAATGCTTTGGAATGCTGTTATATTTGG                         TCCAGATGACACTCCATGGGGTGGAG
genomic: GGAGCTCCCCAAGACAACAATATAATGCTTTGGAATGCTGTTATATTTGGgtaatgggca ... tggattgcagTCCAGATGACACTCCATGGGATGGAG
EST: gi|351029101|gb|FQ435301.1|FQ435301
EST:     GGAGCTCCCCAAGACAACAATATAATGCTTTGGAATGCTGTTATATTTGG                         TCCAGATGACACTCCATGGGATGGAG
genomic: GGAGCTCCCCAAGACAACAATATAATGCTTTGGAATGCTGTTATATTTGGgtaatgggca ... tggattgcagTCCAGATGACACTCCATGGGATGGAG
EST: gi|30302161|gb|CB978955.1|CB978955
EST:     GGAGCTCCCCAAGACAACAATATAATGCTTTGGAATGCTGTTATATTTGG                         TCCAGATGACACTCCATGGGATGGAG
genomic: GGAGCTCCCCAAGACAACAATATAATGCTTTGGAATGCTGTTATATTTGGgtaatgggca ... tggattgcagTCCAGATGACACTCCATGGGATGGAG
EST: gi|351024814|gb|FQ430639.1|FQ430639
EST:     GGAGCTCCCCAAGACAACAATATAATGCTTTGGAATGCTGTTATATTTGG                         TCCAGATGACACTCCATGGGATGGAG
genomic: GGAGCTCCCCAAGACAACAATATAATGCTTTGGAATGCTGTTATATTTGGgtaatgggca ... tggattgcagTCCAGATGACACTCCATGGGATGGAG
EST: gi|351053304|gb|FQ459172.1|FQ459172
EST:     GGAGCTCCCCAAGACAACAATATAATGCTTTGGAATGCTGTTATATTTGG                         TCCAGATGACACTCCATGGGATGGAG
genomic: GGAGCTCCCCAAGACAACAATATAATGCTTTGGAATGCTGTTATATTTGGgtaatgggca ... tggattgcagTCCAGATGACACTCCATGGGATGGAG
EST: gi|110714545|gb|EE091578.1|EE091578
EST:     GGAGCTCCCCAAGACAACAATATAATGCTTTGGAATGCTGTTATATTTGG                         TCCAGATGACACTCCATGGGATGGAG
genomic: GGAGCTCCCCAAGACAACAATATAATGCTTTGGAATGCTGTTATATTTGGgtaatgggca ... tggattgcagTCCAGATGACACTCCATGGGATGGAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGATGAGAGATTTTAAGAGGTTGCAACAGGACCCCCCTGCCGGCATCAGTGGAGCTCCCCAAGACAACAATATAATGCTTTGGAATGCTGTTATATTTGGgtaatgggcaacaaaattcatgaaaactgttattgtgtttgcttatgttatgtgtttatttatttgccttttactttctcagtatgtttaagtatggttggataagccatttctggtttcttttctgatttggattgcag

- - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT