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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCTCGAGTCCAAAATTCCAAGACGGGCTTCGCCTTCCTCACCTCCGATCTCAGATCTTACTTTTCCCAAATTGCCCCTTCCTCTTCTCACATTTCCACTgtatggcctcaatactctcttggaatttccttgattttttgcttcagatctcgtttcaaattctctctttggttcaaaatttggggtttttttggttgtt...

Basic information

species Vitis vinifera
transcript Vv17s0000g03870.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|352763871|gb|FQ465321.1|FQ465321
EST:     TCAGATCTTACTTTTCCCAAATTGCCCCTTCCTCTTCTCACATTTCCACT                         GTTCCGAGATGGCTATGATTGACGAGCCTCTGTATCCAATTGCGGTTTTGA
genomic: TCAGATCTTACTTTTCCCAAATTGCCCCTTCCTCTTCTCACATTTCCACTgtatggcctc ... gcgtttgcagGTTCCGAGATGGCTATGATTGACGAGCCTCTGTATCCAATTGCGGTTTTGA
EST: gi|110723764|gb|EE101450.1|EE101450
EST:     TCAGATCTTACTTTTCCCAAATTGCCCCTTCCTCTTCTCACATTTCCACT                         GTTCCGAGATGGCTATGATTGACGAGCCTCTGTATCCAATTGCGGTTTTGA
genomic: TCAGATCTTACTTTTCCCAAATTGCCCCTTCCTCTTCTCACATTTCCACTgtatggcctc ... gcgtttgcagGTTCCGAGATGGCTATGATTGACGAGCCTCTGTATCCAATTGCGGTTTTGA
EST: gi|71858238|gb|DT007293.1|DT007293
EST:     TCAGATCTTACTTTTCCCAAATTGCCCCTTCCTCTTCTCACATTTCCACT                         GTTCCGAGATGGCTATGATTGACGAGCCTCTGTATCCAATTGCGGTTTTGA
genomic: TCAGATCTTACTTTTCCCAAATTGCCCCTTCCTCTTCTCACATTTCCACTgtatggcctc ... gcgtttgcagGTTCCGAGATGGCTATGATTGACGAGCCTCTGTATCCAATTGCGGTTTTGA
EST: gi|352781471|gb|FQ468315.1|FQ468315
EST:     TCAGATCTTACTTTTCCCAAATTGCCCCTTCCTCTTCTCACATTTCCACT                         GTTCCGAGATGGCTATGATTGACGAGCCTCTGTATCCAATTGCGGTTTTGA
genomic: TCAGATCTTACTTTTCCCAAATTGCCCCTTCCTCTTCTCACATTTCCACTgtatggcctc ... gcgtttgcagGTTCCGAGATGGCTATGATTGACGAGCCTCTGTATCCAATTGCGGTTTTGA
EST: gi|352769561|gb|FQ468489.1|FQ468489
EST:     TCAGATCTTACTTTTCCCAAATTGCCCCTTCCTCTTCTCACATTTCCACT                         GTTCCGAGATGGCTATGATTGACGAGCCTCTGTATCCAATTGCGGTTTTGA
genomic: TCAGATCTTACTTTTCCCAAATTGCCCCTTCCTCTTCTCACATTTCCACTgtatggcctc ... gcgtttgcagGTTCCGAGATGGCTATGATTGACGAGCCTCTGTATCCAATTGCGGTTTTGA
EST: gi|37183448|gb|CF602802.1|CF602802
EST:     TCAGATCTTACTTTTCCCAAATTGCCCCTTCCTCTTCTCACATTTCCACT                         GTTCCGAGATGGCTATGATTGACGAGCCTCTGTATCCAATTGCGGTTTTGA
genomic: TCAGATCTTACTTTTCCCAAATTGCCCCTTCCTCTTCTCACATTTCCACTgtatggcctc ... gcgtttgcagGTTCCGAGATGGCTATGATTGACGAGCCTCTGTATCCAATTGCGGTTTTGA
EST: gi|22010752|gb|BQ795786.1|BQ795786
EST:     TCAGATCTTACTTTTCCCAAATTGCCCCTTCCTCTTCTCACATTTCCACT                         GTTCCGAGATGGCTATGATTGACGAGCCTCTGTATCCAATTGCGGTTTTGA
genomic: TCAGATCTTACTTTTCCCAAATTGCCCCTTCCTCTTCTCACATTTCCACTgtatggcctc ... gcgtttgcagGTTCCGAGATGGCTATGATTGACGAGCCTCTGTATCCAATTGCGGTTTTGA
EST: gi|110698010|gb|EE075532.1|EE075532
EST:     TCAGATCTTACTTTTCCCAAATTGCCCCTTCCTCTTCTCACATTTCCACT                         GTTCCGAGATGGCTATGATTGACGAGCCTCTGTATCCAATTGCGGTTTTGA
genomic: TCAGATCTTACTTTTCCCAAATTGCCCCTTCCTCTTCTCACATTTCCACTgtatggcctc ... gcgtttgcagGTTCCGAGATGGCTATGATTGACGAGCCTCTGTATCCAATTGCGGTTTTGA
EST: gi|71883706|gb|DT032761.1|DT032761
EST:     TCAGATCTTACTTTTCCCAAATTGCCCCTTCCTCTTCTCACATTTCCACT                         GTTCCGAGATGGCTATGATTGACGAGCCTCTGTATCCAATTGCGGTTTTGA
genomic: TCAGATCTTACTTTTCCCAAATTGCCCCTTCCTCTTCTCACATTTCCACTgtatggcctc ... gcgtttgcagGTTCCGAGATGGCTATGATTGACGAGCCTCTGTATCCAATTGCGGTTTTGA
EST: gi|352778272|gb|FQ465582.1|FQ465582
EST:     TCAGATCTTACTTTTCCCAAATTGCCCCTTCCTCTTCTCACATTTCCACT                         GTTCCGAGATGGCTATGATTGACGAGCCTCTGTATCCAATTGCGGTTTTGA
genomic: TCAGATCTTACTTTTCCCAAATTGCCCCTTCCTCTTCTCACATTTCCACTgtatggcctc ... gcgtttgcagGTTCCGAGATGGCTATGATTGACGAGCCTCTGTATCCAATTGCGGTTTTGA
EST: gi|352763901|gb|FQ465351.1|FQ465351
EST:     TCAGATCTTACTTTTCCCAAATTGCCCCTTCCTCTTCTCACATTTCCACT                         GTTCCGAGATGGCTATGATTGACGAGCCTCTGTATCCAATTGCGGTTTTGA
genomic: TCAGATCTTACTTTTCCCAAATTGCCCCTTCCTCTTCTCACATTTCCACTgtatggcctc ... gcgtttgcagGTTCCGAGATGGCTATGATTGACGAGCCTCTGTATCCAATTGCGGTTTTGA
EST: gi|37189319|gb|CF608668.1|CF608668
EST:     TCAGATCTTACTTTTCCCAAATTGCCCCTTCCTCTTCTCACATTTCCACT                         GTTCCGAGATGGCTATGATTGACGAGCCTCTGTATCCAATTGCGGTTTTGA
genomic: TCAGATCTTACTTTTCCCAAATTGCCCCTTCCTCTTCTCACATTTCCACTgtatggcctc ... gcgtttgcagGTTCCGAGATGGCTATGATTGACGAGCCTCTGTATCCAATTGCGGTTTTGA
EST: gi|352787201|gb|FQ477821.1|FQ477821
EST:     TCAGATCTTACTTTTCCCAAATTGCCCCTTCCTCTTCTCACATTTCCACT                         GTTCCGAGATGGCTATGATTGACGAGCCTCTGTATCCAATTGCGGTTTTGA
genomic: TCAGATCTTACTTTTCCCAAATTGCCCCTTCCTCTTCTCACATTTCCACTgtatggcctc ... gcgtttgcagGTTCCGAGATGGCTATGATTGACGAGCCTCTGTATCCAATTGCGGTTTTGA
EST: gi|352776769|gb|FQ472656.1|FQ472656
EST:     TCAGATCTTACTTTTCCCAAATTGCCCCTTCCTCTTCTCACATTTCCACT                         GTTCCGAGATGGCTATGATTGACGAGCCTCTGTATCCAATTGCGGTTTTGA
genomic: TCAGATCTTACTTTTCCCAAATTGCCCCTTCCTCTTCTCACATTTCCACTgtatggcctc ... gcgtttgcagGTTCCGAGATGGCTATGATTGACGAGCCTCTGTATCCAATTGCGGTTTTGA
EST: gi|352773443|gb|FQ472225.1|FQ472225
EST:     TCAGATCTTACTTTTCCCAAATTGCCCCTTCCTCTTCTCACATTTCCACT                         GTTCCGAGATGGCTATGATTGACGAGCCTCTGTATCCAATTGCGGTTTTGA
genomic: TCAGATCTTACTTTTCCCAAATTGCCCCTTCCTCTTCTCACATTTCCACTgtatggcctc ... gcgtttgcagGTTCCGAGATGGCTATGATTGACGAGCCTCTGTATCCAATTGCGGTTTTGA
EST: gi|352777593|gb|FQ466646.1|FQ466646
EST:     TCAGATCTTACTTTTCCCAAATTGCCCCTTCCTCTTCTCACATTTCCACT                         GTTCCGAGATGGCTATGATTGACGAGCCTCTGTATCCAATTGCGGTTTTGA
genomic: TCAGATCTTACTTTTCCCAAATTGCCCCTTCCTCTTCTCACATTTCCACTgtatggcctc ... gcgtttgcagGTTCCGAGATGGCTATGATTGACGAGCCTCTGTATCCAATTGCGGTTTTGA
EST: gi|352768313|gb|FQ469488.1|FQ469488
EST:     TCAGATCTTACTTTTCCCAAATTGCCCCTTCCTCTTCTCACATTTCCACT                         GTTCCGAGATGGCTATGATTGACGAGCCTCTGTATCCAATTGCGGTTTTGA
genomic: TCAGATCTTACTTTTCCCAAATTGCCCCTTCCTCTTCTCACATTTCCACTgtatggcctc ... gcgtttgcagGTTCCGAGATGGCTATGATTGACGAGCCTCTGTATCCAATTGCGGTTTTGA
EST: gi|156738161|gb|EV242282.1|EV242282
EST:     TCTCACATTTCCACT                         GTTCCGAGATGGCTATGATTGACGAGCCTCTGTATCCAATTGCGGTTTTGA
genomic: TCTCACATTTCCACTgtatggcctc ... gcgtttgcagGTTCCGAGATGGCTATGATTGACGAGCCTCTGTATCCAATTGCGGTTTTGA
EST: gi|352769371|gb|FQ471520.1|FQ471520
EST:     TCAGATCTTACTTTTCCCAAATTGCCCCTTCCTCTTCTCACATTTCCACT                         GTTCCGAGATGGCTATGATTGACGAGCCTCTGTATCCAATTGCGGTTTTGA
genomic: TCAGATCTTACTTTTCCCAAATTGCCCCTTCCTCTTCTCACATTTCCACTgtatggcctc ... gcgtttgcagGTTCCGAGATGGCTATGATTGACGAGCCTCTGTATCCAATTGCGGTTTTGA
EST: gi|22010753|gb|BQ795787.1|BQ795787
EST:     TCAGATCTTACTTTTCCCAAATTGCCCCTTCCTCTTCTCACATTTCCACT                         GTTCCGAGATGGCTATGATTGACGAGCCTCTGTATCCAATTGCGGTTTTGA
genomic: TCAGATCTTACTTTTCCCAAATTGCCCCTTCCTCTTCTCACATTTCCACTgtatggcctc ... gcgtttgcagGTTCCGAGATGGCTATGATTGACGAGCCTCTGTATCCAATTGCGGTTTTGA
EST: gi|352772524|gb|FQ471999.1|FQ471999
EST:     TCAGATCTTACTTTTCCCAAATTGCCCCTTCCTCTTCTCACATTTCCACT                         GTTCCGAGATGGCTATGATTGACGAGCCTCTGTATCCAATTGCGGTTTTGA
genomic: TCAGATCTTACTTTTCCCAAATTGCCCCTTCCTCTTCTCACATTTCCACTgtatggcctc ... gcgtttgcagGTTCCGAGATGGCTATGATTGACGAGCCTCTGTATCCAATTGCGGTTTTGA