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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGAGGTCTCTCTGTGAAACGGCGGGGCCGGCCTCCTAAGGCTGACGGACCGAAGAGGCCCAAGAAGCTTACTGGAAGGCCAGTGGGCCGGCCCAGAAAGgtgagatcacttttctctttcccgcacttttggctatccacactgactttgaatttgaattgttgtttggctctccacagtagctttatcaaattgattt...

Basic information

species Vitis vinifera
transcript Vv17s0000g02550.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110386787|gb|EC951412.1|EC951412
EST:     CCAAGAGGCCCAAGAAGCTTACTGGAAGGCCAGTGGGCCGGCCCAGAAAG                         AAACTTGCAACTGGGGAAATTCTGCCAGCTGCTTCCGAACAACCAGTGGCA
genomic: CGAAGAGGCCCAAGAAGCTTACTGGAAGGCCAGTGGGCCGGCCCAGAAAGgtgagatcac ... tttacacaagAAACTTGCAACTGGGGAAATTCTGCCAGCTGCTTCCGAACAACCAGTGGCA
EST: gi|71872985|gb|DT022040.1|DT022040
EST:     CCAAGAGGCCCAAGAAGCTTACTGGAAGGCCAGTGGGCCGGCCCAGAAAG                         AAACTTGCAACTGGGGAAATTCTGCCAGCTGCTTCCGAACAACCAGTGGCA
genomic: CGAAGAGGCCCAAGAAGCTTACTGGAAGGCCAGTGGGCCGGCCCAGAAAGgtgagatcac ... tttacacaagAAACTTGCAACTGGGGAAATTCTGCCAGCTGCTTCCGAACAACCAGTGGCA
EST: gi|351052028|gb|FQ455321.1|FQ455321
EST:     CCAAGAGGCCCAAGAAGCTTACTGGAAGGCCAGTGGGCCGGCCCAGAAAG                         AAACTTGCAACTGGGGAAATTCTGCCAGCTGCTTCCGAACAACCAGTGGCA
genomic: CGAAGAGGCCCAAGAAGCTTACTGGAAGGCCAGTGGGCCGGCCCAGAAAGgtgagatcac ... tttacacaagAAACTTGCAACTGGGGAAATTCTGCCAGCTGCTTCCGAACAACCAGTGGCA
EST: gi|110361389|gb|EC924857.1|EC924857
EST:     CGAAGAGGCCCAAGAAGCTTACTGGAAGGCCAGTGGGCCGGCCCAGAAAG                         AAACTTGCAACTGGGGAAATTCTGCCAGCTGCTTCCGAACAACCAGTGGCA
genomic: CGAAGAGGCCCAAGAAGCTTACTGGAAGGCCAGTGGGCCGGCCCAGAAAGgtgagatcac ... tttacacaagAAACTTGCAACTGGGGAAATTCTGCCAGCTGCTTCCGAACAACCAGTGGCA
EST: gi|351044429|gb|FQ442960.1|FQ442960
EST:     CCAAGAGGCCCAAGAAGCTTACTGGAAGGCCAGTGGGCCGGCCCAGATAG                         AAACTTGCAACTGGGGAAATTCTGCCAGCTGCTTCCGAACAACCAGTGGCA
genomic: CGAAGAGGCCCAAGAAGCTTACTGGAAGGCCAGTGGGCCGGCCCAGAAAGgtgagatcac ... tttacacaagAAACTTGCAACTGGGGAAATTCTGCCAGCTGCTTCCGAACAACCAGTGGCA
EST: gi|352781293|gb|FQ467374.1|FQ467374
EST:     CGAAGAGGCCCAAGAAGCTTACTGGAAGGCCAGTGGGCCGGCCCAGAAAG                         AAACTTGCAACTGGGGAAATTCTGCCAGCTGCTTCCGAACAACCAGTGGCA
genomic: CGAAGAGGCCCAAGAAGCTTACTGGAAGGCCAGTGGGCCGGCCCAGAAAGgtgagatcac ... tttacacaagAAACTTGCAACTGGGGAAATTCTGCCAGCTGCTTCCGAACAACCAGTGGCA
EST: gi|352767930|gb|FQ466139.1|FQ466139
EST:     CGAAGAGGCCCAAGAAGCTTACTGGAAGGCCAGTGGGCCGGCCCAGAAAG                         AAACTTGCAACTGGGGAAATTCTGCCAGCTGCTTCCGAACAACCAGTGGCA
genomic: CGAAGAGGCCCAAGAAGCTTACTGGAAGGCCAGTGGGCCGGCCCAGAAAGgtgagatcac ... tttacacaagAAACTTGCAACTGGGGAAATTCTGCCAGCTGCTTCCGAACAACCAGTGGCA
EST: gi|161720314|gb|FC071167.1|FC071167
EST:     CCAAGAGGCCCAAGAAGCTTACTGGAAGGCCAGTGGGCCGGCCCAGAA-G                         AAACTTTGCA-CTGGGGAAATTTCTGC-AGCTGCTT
genomic: CGAAGAGGCCCAAGAAGCTTACTGGAAGGCCAGTGGGCCGGCCCAGAAAGgtgagatcac ... tttacacaagAAACTT-GCAACTGGGGAAATT-CTGCCAGCTGCTT
EST: gi|352777515|gb|FQ474512.1|FQ474512
EST:     CGAGGAGGCCCAAGAAGCTTACTGGAAGGCCAGGGGGCCGGCCCAGAAAG                         AAACTTGCAACGGGGGAAATTCTGCCAGTTGCTTCCGAACAACCAGTGGCA
genomic: CGAAGAGGCCCAAGAAGCTTACTGGAAGGCCAGTGGGCCGGCCCAGAAAGgtgagatcac ... tttacacaagAAACTTGCAACTGGGGAAATTCTGCCAGCTGCTTCCGAACAACCAGTGGCA
EST: gi|352777989|gb|FQ467042.1|FQ467042
EST:     CGAAGAGGCCCAAGAAGCTTACTGGAAGGCCAGTGGGCCGGCCCAGAAAG                         AAACTTGCAACTGGGGAAATTTTGCCAGCTGCTTCCGAACAACCAGTGGCA
genomic: CGAAGAGGCCCAAGAAGCTTACTGGAAGGCCAGTGGGCCGGCCCAGAAAGgtgagatcac ... tttacacaagAAACTTGCAACTGGGGAAATTCTGCCAGCTGCTTCCGAACAACCAGTGGCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGGAGGTCTCTCTGTGAAACGGCGGGGCCGGCCTCCTAAGGCTGACGGACCGAAGAGGCCCAAGAAGCTTACTGGAAGGCCAGTGGGCCGGCCCAGAAAGgtgagatcacttttctctttcccgcacttttggctatccacactgactttgaatttgaattgttgtttggctctccacagtagctttatcaaattgattt

- - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctttccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaattga