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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAACTTGGCTGATGTTGTTCTTGGGTGCGATTCTCTGGAACCATATCTGgtaaattcttttactcacttttcaagcgaaacccatttgatttctcttatgattttgtgattccttgagaaaattgattttgggtatgcatacttttttt...

Basic information

species Vitis vinifera
transcript Vv17s0000g02260.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33407929|gb|CF213556.1|CF213556
EST:     GAAACTTGGCTGATGTTGTTCTTGGGTGCGATTCTCTGGAACCATATCTG                         AAGAG-TGATGTGCCCTATTTTGGGTGCATTGTTGGTAGAGT
genomic: GAAACTTGGCTGATGTTGTTCTTGGGTGCGATTCTCTGGAACCATATCTGgtaaattctt ... gtgtgatcagAA-AGGTGATGTGCCCTATTTTGGGTGCATTGTTGGTAGAGT
EST: gi|161714271|gb|FC063529.1|FC063529
EST:     GAAACTTGGCTGATGTTGTTCTTGGGTGCGATTCTCTGGAACCATATCTG                         AAAGGTGATGTGCCCTATTTTGGGTGCATTGTTGGTAGAGTTGCAAATAGA
genomic: GAAACTTGGCTGATGTTGTTCTTGGGTGCGATTCTCTGGAACCATATCTGgtaaattctt ... gtgtgatcagAAAGGTGATGTGCCCTATTTTGGGTGCATTGTTGGTAGAGTTGCAAATAGA
EST: gi|110711155|gb|EE087370.1|EE087370
EST:     GAAACTTGGCTGATGTTGTTCTTGGGTGCGATTCTCTGGAACCATATCTG                         AAAGGTGATGTGCCCTATTTTGGGTGCATTGTTGGTAGAGTTGCAAATAGA
genomic: GAAACTTGGCTGATGTTGTTCTTGGGTGCGATTCTCTGGAACCATATCTGgtaaattctt ... gtgtgatcagAAAGGTGATGTGCCCTATTTTGGGTGCATTGTTGGTAGAGTTGCAAATAGA
EST: gi|110685468|gb|EE062213.1|EE062213
EST:     GAAACTTGGCTGATGTTGTTCTTGGGTGCGATTCTCTGGAACCATATCTG                         AAAGGTGATGTGCCCTATTTTGGGTGCATTGTTGGTAGAGTTGCAAATAGA
genomic: GAAACTTGGCTGATGTTGTTCTTGGGTGCGATTCTCTGGAACCATATCTGgtaaattctt ... gtgtgatcagAAAGGTGATGTGCCCTATTTTGGGTGCATTGTTGGTAGAGTTGCAAATAGA
EST: gi|161707206|gb|FC057321.1|FC057321
EST:     GAAACTTGGCTGATGTTGTTCTTGGGTGCGATTCTCTGGAACCATATCTG                         AAAGGTGATGTGCCCTATTTTGGGTGCATTGTTGGTAGAGTTGCAAATAGA
genomic: GAAACTTGGCTGATGTTGTTCTTGGGTGCGATTCTCTGGAACCATATCTGgtaaattctt ... gtgtgatcagAAAGGTGATGTGCCCTATTTTGGGTGCATTGTTGGTAGAGTTGCAAATAGA
EST: gi|33407393|gb|CF213020.1|CF213020
EST:     GAAACTTGGCTGATGTTGTTCTTGGGTGCGATTCTCTGGAACCATATCTG                         AAAGGTGATGTGCCCTATTTTGGGTGCATTGTTGGTAGAGTTGCAAATAGA
genomic: GAAACTTGGCTGATGTTGTTCTTGGGTGCGATTCTCTGGAACCATATCTGgtaaattctt ... gtgtgatcagAAAGGTGATGTGCCCTATTTTGGGTGCATTGTTGGTAGAGTTGCAAATAGA
EST: gi|110712305|gb|EE089778.1|EE089778
EST:     GAAACTTGGCTGATGTTGTTCTTGGGTGCGATTCTCTGGAACCATATCTG                         AAAGGTGATGTGCCCTATTTTGGGTGCATTGTTGGTAGAGTTGCAAATAGA
genomic: GAAACTTGGCTGATGTTGTTCTTGGGTGCGATTCTCTGGAACCATATCTGgtaaattctt ... gtgtgatcagAAAGGTGATGTGCCCTATTTTGGGTGCATTGTTGGTAGAGTTGCAAATAGA
EST: gi|161714524|gb|FC062974.1|FC062974
EST:     GAAACTTGGCTGATGTTGTTCTTGGGTGCTATTCTCTGGAACCATATCTG                         AAAGGTGATGTGCCCTATTTTGGGTGCATTGTTGGTAGAGTTGCAAATAGA
genomic: GAAACTTGGCTGATGTTGTTCTTGGGTGCGATTCTCTGGAACCATATCTGgtaaattctt ... gtgtgatcagAAAGGTGATGTGCCCTATTTTGGGTGCATTGTTGGTAGAGTTGCAAATAGA
EST: gi|110720115|gb|EE095756.1|EE095756
EST:     GAAACTTGGCTGATGTTGTTCTTGGGTGCGATTCTCTGGAACCATATCTG                         AAAGGTGATGTGCCCTATTTTGGGTGCATTGTTGGTAGAGTTGCAAATAGA
genomic: GAAACTTGGCTGATGTTGTTCTTGGGTGCGATTCTCTGGAACCATATCTGgtaaattctt ... gtgtgatcagAAAGGTGATGTGCCCTATTTTGGGTGCATTGTTGGTAGAGTTGCAAATAGA
EST: gi|110719295|gb|EE097104.1|EE097104
EST:     GAAACTTGGCTGATGTTGTTCTTGGGTGCGATTCTCTGGAACCATATCTG                         AAAGGTGATGTGCCCTATTTTGGGTGCATTGTTGGTAGAGTTGCAAATAGA
genomic: GAAACTTGGCTGATGTTGTTCTTGGGTGCGATTCTCTGGAACCATATCTGgtaaattctt ... gtgtgatcagAAAGGTGATGTGCCCTATTTTGGGTGCATTGTTGGTAGAGTTGCAAATAGA
EST: gi|161715455|gb|FC069043.1|FC069043
EST:     GAAACTTGGCTGATGTTGTTCTTGGGTGCGATTCTCTGGAACCATATCTG                         AAAGGTGATGTGCCCTATTTTGGGTGCATTGTTGGTAGAGTTGCAAATAGA
genomic: GAAACTTGGCTGATGTTGTTCTTGGGTGCGATTCTCTGGAACCATATCTGgtaaattctt ... gtgtgatcagAAAGGTGATGTGCCCTATTTTGGGTGCATTGTTGGTAGAGTTGCAAATAGA
EST: gi|294965333|gb|GW837048.1|GW837048
EST:     GAAACTTGGCTGATGTTGTTCTTGGGTGCGATTCTCTGGAACCATATCTG                         AAAGGTGATGTGCCCTATTTTGGGTGCATTGTTGGTAGAGTTGCAAATAGA
genomic: GAAACTTGGCTGATGTTGTTCTTGGGTGCGATTCTCTGGAACCATATCTGgtaaattctt ... gtgtgatcagAAAGGTGATGTGCCCTATTTTGGGTGCATTGTTGGTAGAGTTGCAAATAGA
EST: gi|110396622|gb|EC962314.1|EC962314
EST:     GAAACTTGGCTGATGTTGTTCTTGGGTGCGATTCTCTGGAACCATATCTG                         AAAGGTGATGTGCCCTATTTTGGGTGCATTGTTGGTAGAGTTGCAAATAGA
genomic: GAAACTTGGCTGATGTTGTTCTTGGGTGCGATTCTCTGGAACCATATCTGgtaaattctt ... gtgtgatcagAAAGGTGATGTGCCCTATTTTGGGTGCATTGTTGGTAGAGTTGCAAATAGA
EST: gi|110724807|gb|EE100960.1|EE100960
EST:     GAAACTTGGCTGATGTTGTTCTTGGGTGCGATTCTCTGGAACCATATCTG                         AAAGGTGATGTGCCCTATTTTGGGTGCATTGTTGGTAGAGTTGCAAATAGA
genomic: GAAACTTGGCTGATGTTGTTCTTGGGTGCGATTCTCTGGAACCATATCTGgtaaattctt ... gtgtgatcagAAAGGTGATGTGCCCTATTTTGGGTGCATTGTTGGTAGAGTTGCAAATAGA
EST: gi|30301902|gb|CB978696.1|CB978696
EST:     TTCTTGGGTGCGATTCTCTGGAACCATATCTG                         AAAGGTGATGTGCCCTATTTTGGGTGCATTGTTGGTAGAGTTGCAAATAGA
genomic: TTCTTGGGTGCGATTCTCTGGAACCATATCTGgtaaattctt ... gtgtgatcagAAAGGTGATGTGCCCTATTTTGGGTGCATTGTTGGTAGAGTTGCAAATAGA
EST: gi|110712306|gb|EE089779.1|EE089779
EST:     GAAACTTGGCTGATGTTGTTCTTGGGTGCGATTCTCTGGAACCATATCTG                         AAAGGTGATGTGCCCTATTTTGGGTGCATTGTTGGTAGAGTTGCAAATAGA
genomic: GAAACTTGGCTGATGTTGTTCTTGGGTGCGATTCTCTGGAACCATATCTGgtaaattctt ... gtgtgatcagAAAGGTGATGTGCCCTATTTTGGGTGCATTGTTGGTAGAGTTGCAAATAGA
EST: gi|33402576|gb|CF208203.1|CF208203
EST:     GAAACTTGGCTGATGTTGTTCTTGGGTGCGATTCTCTGGAACCATATCTG                         AAAGGTGATGTGCCCTATTTTGGGTGCATTGTTGGTAGAGTTGCAAATAGA
genomic: GAAACTTGGCTGATGTTGTTCTTGGGTGCGATTCTCTGGAACCATATCTGgtaaattctt ... gtgtgatcagAAAGGTGATGTGCCCTATTTTGGGTGCATTGTTGGTAGAGTTGCAAATAGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAAACTTGGCTGATGTTGTTCTTGGGTGCGATTCTCTGGAACCATATCTGgtaaattcttttactcacttttcaagcgaaacccatttgatttctcttatgattttgtgattccttgagaaaattgattttgggtatgcatacttttttt

- - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agcgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gagaaaa