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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTTGAAGATACTAAAATTCCTTGCCAAAGCAATGAGTTTGTTCTTGAGCTTCTCCGTGGTGTGCGGTTGCATTTTGATAGGTTTATTAAGGATCTCAAGgtttgctttatttattttttccctcaaaatatgcttctgcctttttgtgtattacaacaattaaagggtaggcggtattttctttgcaatttctcttatagtatttatttttccttgtag

Basic information

species Vitis vinifera
transcript Vv17s0000g01720.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0000g01720.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA05G03150.1 (Glycine max), 5'ss of exon 2
CTTTGAAGATACTAAAATTCCTTGCCAAAGCAATGAGTTTGTTCTTGAGCTTCTCCGTGGTGTGCGGTTGCATTTTGATAGGTTTATTAAGGATCTCAAGgtttgctttatttattttttccctcaaaatatgcttctgcctttttgtgtattacaacaattaaagggtaggcggtattttctttgcaatttctcttatagtatttatttttccttgtag
 | |||||  ||||| |||||||||||||| |||||||||||   ||| ||||| ||||||||||| || |||||||||| |||| ||   |||||||||||| |  ||   |  |   ||| |     | || |||||  |    |   |   |   |  | |    ||  |  || ||| | |   |||  | || |  |  ||  |||| |      
ATCTGAAGTGACTAAGATTCCTTGCCAAAGTAATGAGTTTGTGAGTGAACTTCTTCGTGGTGTGCGATTCCATTTTGATACGTTTGTTGGTGATCTCAAGgttagtgtttcctcatgcctccttt----tgtgtttctgtatccagg---acacctgtatcttatttatat-cactaatttatat---attgtttttgtgctgcttgatttttcacag--

upper sequence: Vv17s0000g01720.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA07G11560.1 (Glycine max), 5'ss of exon 2
CTTTGAAGATACTAAAATTCCTTGCCAAAGCAATGAGTTTGTTCTTGAGCTTCTCCGTGGTGTGCGGTTGCATTTTGATAGGTTTATTAAGGATCTCAAGgtttgctttatttattttttccctcaaaatatgcttctgcctttttgtgtattacaacaattaaagggtaggcggtattttctttgcaatttctcttatagtatttatttttccttgtag----------
 | ||||  ||||||||||||||||||||| |||||||||||    ||||| || || ||||||||  | ||||||||||||||| | |  |||||||||||| ||   ||||| |  | ||       | || || |||        | || ||     |  |  || |     |||||     |  ||||   ||| | ||||| |||| | |  | |          
ATCTGAACTTACTAAAATTCCTTGCCAAAGTAATGAGTTTGTCGCCGAGCTGCTTCGCGGTGTGCGCCTCCATTTTGATAGGTTTGTCAGTGATCTCAAGgttagc---atttactcctgcctc----gtgtgtttttgcagaagca-gaatcaccgtgttgtataggaata---tatttcgcaagttattttatttaaattattttttttccttgattgaattctgtag

upper sequence: Vv17s0000g01720.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA17G13770.1 (Glycine max), 5'ss of exon 2
CTTTGAAGATACTAAAATTCCTTGCCAAAGCAATGAGTTTGTTCTTGAGCTTCTCCGTGGTGTGCGGTTGCATTTTGATAGGTTTATTAAGGATCTCAAGgtttgctttatttattttttccctcaaaatatgcttctgcctttttgtgtattacaacaa--ttaaagggtaggcggtattttctttgcaatttctcttatagtatttatttttccttgtag
 | |||||  ||||| |||||||||||||| || ||||||||   ||| ||||| || ||||||||||| |||||||||| |||| |    ||||| |||||| |  ||   |  |   ||  |     | || |||||      |||| |  | |||    |   |   |   |  || ||| | |  | | | | ||||  |  ||  |||||   |   
ATCTGAAGTGACTAAGATTCCTTGCCAAAGTAACGAGTTTGTGAGTGAACTTCTTCGCGGTGTGCGGTTCCATTTTGATACGTTTGTCGGTGATCTTAAGgttagtgtttcctcatgcctctttt----tgtgtttctg------tgtgcaggataactgtgtcctatttttatcactaatttatatata-tattttttatgctgcttgattttcacag---

upper sequence: Vv17s0000g01720.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT1G56110.1 (Arabidopsis thaliana), 5'ss of exon 2
CTTTGAAGATACTAAAATTCCTTGCCAAAGCAATGAGTTTGTTCTTGAGCTTCTCCGTGGTGTGCGGTTGCATTTTGATAGGTTTATTAAGGATCTCAAGgtttgctttatttattttttccctcaaaatatgcttctgcctttttgtgtattacaacaattaaagggtaggcggtattttctttgcaatttctcttatagtatttatttttccttgtag
 ||||||| ||||||||| || ||||| ||||||||||||||||||||||||||| | ||||| ||   |||||||||||||||||| |||||  | ||||| || | |  || | | |    | ||||| |  || || || ||||  |||        | | | |||  | | |   |  |    ||||||| ||   |||                 
ATTTGAAGCTACTAAAATCCCATGCCAGAGCAATGAGTTTGTTCTTGAGCTTCTCAGAGGTGTTCGCCAGCATTTTGATAGGTTTATCAAGGACTTAAAGgtgtgatctcctt-tctatgtgtttaaaatct--ttttgtctgtttgcttatc-------tcatatggtttgtgtt--ctcataaaaaatttctgtttatgtag----------------

upper sequence: Vv17s0000g01720.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT3G12860.1 (Arabidopsis thaliana), 5'ss of exon 2
CTTTGAAGATACTAAAATTCCTTGCCAAAGCAATGAGTTTGTTCTTGAGCTTCTCCGTGGTGTGCGGTTGCATTTTGATAGGTTTATTAAGGATCTCAAGgtttgctttatttattttttccctcaaaatatgcttctgcctttttgtgtattacaacaattaaagggtaggcggtattttctttgcaatttctcttatagtatttatttttccttgtag
 ||||||| ||| |||||||||||||| |||||||||||||| | |||||| ||  | ||||||||   |||||| |||||||| || || ||  | ||||| || |||  ||||||||     |  ||||          ||||||  ||||    |          |       || ||||||  ||| |                            
TTTTGAAGCTACCAAAATTCCTTGCCAGAGCAATGAGTTTGTCCATGAGCTCCTTAGAGGTGTGCGTCAGCATTTCGATAGGTTCATCAAAGACTTGAAGgtgtgtttt--ttatttttgattacctaatacctacacatatttttgc-tattcgtgc----------tcaatatcatcttctttataatgtag--------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71864289|gb|DT013344.1|DT013344
EST:     TTCTCCGTGGTGTGCGGTTGCATTTTGATAGGTTTATTAAGGATCTCAAG                         CCTGGAGACCTAGAAAAGGCCCAACTTGGTCTGGGACACAGTTACAGCAGA
genomic: TTCTCCGTGGTGTGCGGTTGCATTTTGATAGGTTTATTAAGGATCTCAAGgtttgcttta ... ttccttgtagCCTGGAGACCTAGAAAAGGCCCAACTTGGTCTGGGACACAGTTACAGCAGA
EST: gi|110712950|gb|EE088442.1|EE088442
EST:     TTCTCCGTGGTGTGCGGTTGCATTTTGATAGGTTTATTAAGGATCTCAAG                         CCTGGAGACCTAGAAAAGGCCCAACTTGGTCTGGGACACAGTTACAGCAGA
genomic: TTCTCCGTGGTGTGCGGTTGCATTTTGATAGGTTTATTAAGGATCTCAAGgtttgcttta ... ttccttgtagCCTGGAGACCTAGAAAAGGCCCAACTTGGTCTGGGACACAGTTACAGCAGA
EST: gi|110686032|gb|EE063274.1|EE063274
EST:     TTCTCCGTGGTGTGCGGTTGCATTTTGATAGGTTTATTAAGGATCTCAAG                         CCTGGAGACCTAGAAAAGGCCCAACTTGGTCTGGGACACAGTTACAGCAGA
genomic: TTCTCCGTGGTGTGCGGTTGCATTTTGATAGGTTTATTAAGGATCTCAAGgtttgcttta ... ttccttgtagCCTGGAGACCTAGAAAAGGCCCAACTTGGTCTGGGACACAGTTACAGCAGA
EST: gi|71861748|gb|DT010803.1|DT010803
EST:     TTCTCCGTGGTGTGCGGTTGCATTTTGATAGGTTTATTAAGGATCTCAAG                         CCTGGAGACCTAGAAAAGGCCCAACTTGGTCTGGGACACAGTTACAGCAGA
genomic: TTCTCCGTGGTGTGCGGTTGCATTTTGATAGGTTTATTAAGGATCTCAAGgtttgcttta ... ttccttgtagCCTGGAGACCTAGAAAAGGCCCAACTTGGTCTGGGACACAGTTACAGCAGA
EST: gi|110690304|gb|EE067284.1|EE067284
EST:     TTCTCCGTGGTGTGCGGTTGCATTTTGATAGGTTTATTAAGGATCTCAAG                         CCTGGAGACCTAGAAAAGGCCCAACTTGGTCTGGGACACAGTTACAGCAGA
genomic: TTCTCCGTGGTGTGCGGTTGCATTTTGATAGGTTTATTAAGGATCTCAAGgtttgcttta ... ttccttgtagCCTGGAGACCTAGAAAAGGCCCAACTTGGTCTGGGACACAGTTACAGCAGA
EST: gi|110718517|gb|EE095438.1|EE095438
EST:     TTCTCCGTGGTGTGCGGTTGCATTTTGATAGGTTTATTAAGGATCTCAAG                         CCTGGAGACCTAGAAAAGGCCCAACTTGGTCTGGGACACAGTTACAGCAGA
genomic: TTCTCCGTGGTGTGCGGTTGCATTTTGATAGGTTTATTAAGGATCTCAAGgtttgcttta ... ttccttgtagCCTGGAGACCTAGAAAAGGCCCAACTTGGTCTGGGACACAGTTACAGCAGA
EST: gi|71865133|gb|DT014188.1|DT014188
EST:     TTCTCCGTGGTGTGCGGTTGCATTTTGATAGGTTTATTAAGGATCTCAAG                         CCTGGAGACCTAGAAAAGGCCCAACTTGGTCTGGGACACAGTTACAGCAGA
genomic: TTCTCCGTGGTGTGCGGTTGCATTTTGATAGGTTTATTAAGGATCTCAAGgtttgcttta ... ttccttgtagCCTGGAGACCTAGAAAAGGCCCAACTTGGTCTGGGACACAGTTACAGCAGA
EST: gi|161719328|gb|FC068961.1|FC068961
EST:     TTCTCCGTGGTGTGCGGTTGCATTTTGATAGGTTTATTAAGGATCTCAAG                         CCTGGAGACCTAGAAAAGGCCCAACTTGGTCTGGGACACAGTTACAGCAGA
genomic: TTCTCCGTGGTGTGCGGTTGCATTTTGATAGGTTTATTAAGGATCTCAAGgtttgcttta ... ttccttgtagCCTGGAGACCTAGAAAAGGCCCAACTTGGTCTGGGACACAGTTACAGCAGA
EST: gi|33404147|gb|CF209774.1|CF209774
EST:     TTCTCCGTGGTGTGCGGTTGCATTTTGATAGGTTTATTAAGGATCTCAAG                         CCTGGAGACCTAGAAAAGGCCCAACTTGGTCTGGGACACAGTTACAGCAGA
genomic: TTCTCCGTGGTGTGCGGTTGCATTTTGATAGGTTTATTAAGGATCTCAAGgtttgcttta ... ttccttgtagCCTGGAGACCTAGAAAAGGCCCAACTTGGTCTGGGACACAGTTACAGCAGA
EST: gi|110701410|gb|EE078950.1|EE078950
EST:     TTCTCCGTGGTGTGCGGTTGCATTTTGATAGGTTTATTAAGGATCTCAAG                         CCTGGAGACCTAGAAAAGGCCCAACTTGGTCTGGGACACAGTTACAGCAGA
genomic: TTCTCCGTGGTGTGCGGTTGCATTTTGATAGGTTTATTAAGGATCTCAAGgtttgcttta ... ttccttgtagCCTGGAGACCTAGAAAAGGCCCAACTTGGTCTGGGACACAGTTACAGCAGA
EST: gi|161720525|gb|FC070912.1|FC070912
EST:     TTCTCCGTGGTGTGCGGTTGCATTTTGATAGGTTTATTAAGGATCTCAAG                         CCTGGAGACCTAGAAAAGGCCCAACTTGGTCTGGGACACAGTTACAGCAGA
genomic: TTCTCCGTGGTGTGCGGTTGCATTTTGATAGGTTTATTAAGGATCTCAAGgtttgcttta ... ttccttgtagCCTGGAGACCTAGAAAAGGCCCAACTTGGTCTGGGACACAGTTACAGCAGA
EST: gi|71857394|gb|DT006449.1|DT006449
EST:     TTCTCCGTGGTGTGCGGTTGCATTTTGATAGGTTTATTAAGGATCTCAAG                         CCTGGAGACCTAGAAAAGGCCCAACTTGGTCTGGGACACAGTTACAGCAGA
genomic: TTCTCCGTGGTGTGCGGTTGCATTTTGATAGGTTTATTAAGGATCTCAAGgtttgcttta ... ttccttgtagCCTGGAGACCTAGAAAAGGCCCAACTTGGTCTGGGACACAGTTACAGCAGA