1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GACGACTTGGATGGAGGAGGAGTGTGATAAGCTGATCATGGCTTCCGTTAACAAGAACTATGTGGACATGGATGAGTATCCAGTCACCACTGAACTTCAGgcatttctctccctcctctttctatctattaataactgttcttcttccttggatctagggttggcaaatgatgaaactaatttagtaagatttcgccata...
species | Vitis vinifera |
transcript | Vv17s0000g00920.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GTATCCAGTCACCACTGAACTTCAG AACCGGTGCGTGAACATGATAGCCCACCTCTTCAATGCTCCAGTGGGTGAGEST: gi|161713001|gb|FC062423.1|FC062423
genomic: GTATCCAGTCACCACTGAACTTCAGgcatttctct ... aattcttcagAACCGGTGCGTGAACATGATAGCCCACCTCTTCAATGCTCCAGTGGGTGAG
EST: ACAAGAACTATGTGGACATGGATGAGTATCCAGTCACCACTGAACTTCAG AACCGGTGCGTGAACATGATAGCCCACCTCTTCAATGCTCCAGTGGGTGAGEST: gi|37184548|gb|CF603902.1|CF603902
genomic: ACAAGAACTATGTGGACATGGATGAGTATCCAGTCACCACTGAACTTCAGgcatttctct ... aattcttcagAACCGGTGCGTGAACATGATAGCCCACCTCTTCAATGCTCCAGTGGGTGAG
EST: ACAAGAACTATGTGGACATGGATGAGTATCCAGTCACCACTGAACTTCAG AACCGGTGCGTGAACATGATAGCCCACCTCTTCAATGCTCCAGTGGGTGAG
genomic: ACAAGAACTATGTGGACATGGATGAGTATCCAGTCACCACTGAACTTCAGgcatttctct ... aattcttcagAACCGGTGCGTGAACATGATAGCCCACCTCTTCAATGCTCCAGTGGGTGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACGACTTGGATGGAGGAGGAGTGTGATAAGCTGATCATGGCTTCCGTTAACAAGAACTATGTGGACATGGATGAGTATCCAGTCACCACTGAACTTCAGgcatttctctccctcctctttctatctattaataactgttcttcttccttggatctagggttggcaaatgatgaaactaatttagtaagatttcgccata
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccctcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gatgaaa