Sequence
atgc intronic sequence ATGC exonic sequenceTGTCAGAATTTTGAGTGGATTGCATGTTAGAAGGTCCTTAGTTGGTTCATTTGAGGAGTCCCTGTTGTCTGGCCGGTTATCATCTGGGAAAGTCAGTCAGgttagtatcaacatcctgtgatataaggtggtattcatgtgtttaacttctgctacttatacacgtttttcttcaacttcttttttatgatttttatatgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g00570.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA06G17450.1 (Glycine max), 5'ss of exon 7
-TGTCAGAATTTTGAGTGGATTGCATGTTAGAAGGTCCTTAGTTGGTTCATTTGAGGAGTCCCTGTTGTCTGGCCGGTTATCATCTGGGAAAGTCAGTCAGgttagtatcaacatcctgtgatataaggtggtattcatgtgtttaacttctgctacttatacacgtttttcttcaacttcttttttatgatttttatatgcag
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ACGT-GGAACTATGAGTAGACTGCCAATTAGAAGGTCCTTGGTTGGTTCATTTGAAGAATCTTTGTTATCTGGTCGCTTACTATCTGGGAAAGTTAGTCAGgttggaattattctcatatacaggcatcctacatt-atgcactagtttcctgatgacctttctgttattttactcgtgtaattgtcgtggcttctatttgcag
upper sequence: Vv17s0000g00570.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA04G37640.1 (Glycine max), 5'ss of exon 1
-TGTCAGAATTTTGAGTGGATTGCATGTTAGAAGGTCCTTAGTTGGTTCATTTGAGGAGTCCCTGTTGTCTGGCCGGTTATCATCTGGGAAAGTCAGTCAGgttagtatcaacatcctgtgatataaggtggtattcatgtgtttaacttctgctacttatacacgtttttcttcaacttcttttttatgatttttatatgcag
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ATGT-GGAACTATGAGTAGACTGCCAATTAGAAGGTCCTTGGTTGGTTCATTTGAGGAATCTTTGTTATCTGGTCGCCTACTATCTGGGAAAGTTAGTCCGgttggtattattctcatat-acaggcttcctactttatgcattagtttcctaatgacctttcagttattttactcttgtaattgttgtggcttctatttgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161715372|gb|FC066464.1|FC066464EST: TTGAGGAGTCCCTGTTGTCTGGCCGGTTATCATCTGGGAAAGTCAGTCAG AAAATCGATGGTTTCCTAGCTGTTCTTAATGTCACTGGAGGGAATTTCTCA
genomic: TTGAGGAGTCCCTGTTGTCTGGCCGGTTATCATCTGGGAAAGTCAGTCAGgttagtatca ... ttatatgcagAAAATCGATGGTTTCCTAGCTGTTCTTAATGTCACTGGAGGGAATTTCTCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGTCAGAATTTTGAGTGGATTGCATGTTAGAAGGTCCTTAGTTGGTTCATTTGAGGAGTCCCTGTTGTCTGGCCGGTTATCATCTGGGAAAGTCAGTCAGgttagtatcaacatcctgtgatataaggtggtattcatgtgtttaacttctgctacttatacacgtttttcttcaacttcttttttatgatttttatatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG