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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAGCTTATCTCTTCAAACTGGCCTTATTGGAATCGGACAGAAGGGGCTGATCACTTTTTTGTAGTGCCCCATGACTTTGGGGCGTGCTTCCATTACCAAgtaagaaacttcaatttcttttgtcacccagtactcccccacattcattcgtttggatagtctgcttgaatgtgctcttgaaccaactggcccagatttagtttttcagagaggcctctggctagtgtcttttcttcctaaactcattattcactttcactgggcctctgttcatgtccattataacag

Basic information

species Vitis vinifera
transcript Vv17s0000g00120.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0000g00120.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA05G33420.1 (Glycine max), 5'ss of exon 2
ACAGCTTATCTCTTCAAACTGGCCTTATTGGAATCGGACAGAAGGGGCTGATCACTTTTTTGTAGTGCCCCATGACTTTGGGGCGTGCTTCCATTACCAAgtaagaaacttcaatttcttttgtcacccagtactcccccacattcattcgtttggatagtctgcttgaatgtgctcttgaaccaactggcccagatttagtttttcagagaggcctctggctagtgtcttttcttc-ctaaactcattattcactttcactgggcctctgttcatgtccattataacag
||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||| ||||| || || |||||||||||||| || ||||||||||| |||  | | ||    |||   | ||||    || |    |  |   ||| |     ||  | ||||    || |   |  ||| ||      ||| ||   | |   | |     |      ||     |    | |  |  | ||||||||   ||  |                              
ACAGCTTATTTCTTCAAACTGGCCTTATTGGAACCGGACAGAGGGGGCTGATCACTTCTTTGTGGTTCCTCATGACTTTGGGGCATGTTTCCATTACCAGgtacaagattt----ttcacatatcact-gttagttttacttaagtatttgaaccaattatatgctgtcttgagaagt--aacaaagaaaagcagtttagatgtaggatacctatccaaaagtaacacataacatgcattttattcattattttgttctag-----------------------------

upper sequence: Vv17s0000g00120.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA06G17140.1 (Glycine max), 5'ss of exon 2
ACAGCTTATCTCTTCAAACTGGCCTTATTGGAATCGGACAGAAGGGGCTGATCACTTTTTTGTAGTGCCCCATGACTTTGGGGCGTGCTTCCATTACCAAgtaagaaacttcaatttcttttgtcacccagtactcc--cccacattcattcgtttggatagtctgcttgaat---gtgctcttgaaccaactggccca-gatttagtttttcagagaggcctctggctagtgtctttt-cttcctaaactcattattcactttcactgggcctctgttcatgtccattataacag
||||||||| |||||||||||||||||||||||  ||||||||||||| ||||| || |||||    || |||||||||||||| ||||||||||| ||||||||||| ||    | |  || | |    ||  |      |||  | | |  |||  | | |       |||   ||| | ||     |   || ||| |  ||    | | | ||| |    ||| || |||    | |    | | |   || ||   || ||                              
ACAGCTTATTTCTTCAAACTGGCCTTATTGGAACAGGACAGAAGGGGCAGATCATTTCTTTGTGACCCCTCATGACTTTGGGGCATGCTTCCATTATCAAgtaagaaatttagtgtaccattttaattttgttatttaaatcactattagttcttttaagaattcaaacaaattttgtggtttttggtgacaaggaccatggattccactattaaagatgtacatggatattgtaacatgcacttttatcatgtttttttgttccag-----------------------------

upper sequence: Vv17s0000g00120.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA04G37920.1 (Glycine max), 5'ss of exon 2
ACAGCTTATCTCTTCAAACTGGCCTTATTGGAATCGGACAGAAGGGGCTGATCACTTTTTTGTAGTGCCCCATGACTTTGGGGCGTGCTTCCATTACCAAgtaagaaacttcaatttcttttgtcacccagtactcccccacattcattcgtttggatagtctgcttgaatgtgctcttgaaccaactggcccagatttagtttttcagagaggcctctggctagtgtcttttcttcctaaactcat-tattcactttcactgggcctctgttcatgtccattataacag
||||||||| |||||||||||||||||||||||  ||||||||||||| ||||| || |||||    || |||||||||||||| ||||||||||| ||||||||||| || | | |    | | |      | |   | |  |||||   | |   ||||    || |   |    |  ||| || ||       ||| ||     |||  | |||  |  |    ||||   |   || |   || |  | || | ||||       ||||  | ||| ||  |    
ACAGCTTATTTCTTCAAACTGGCCTTATTGGAACAGGACAGAAGGGGCAGATCATTTCTTTGTGACCCCTCATGACTTTGGGGCATGCTTCCATTATCAAgtaagaaattt-agtgtaccgtttta------attttgctattttcatcactat---tagttctattaagaat----tcaaacaaattgtgtggtgtttggtg----agaaggaccttggattttattcttcaatatgtacatggatattgtaacatgcacttttatcatgtt--tttccgttccag---

upper sequence: Vv17s0000g00120.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT5G61840.1 (Arabidopsis thaliana), 5'ss of exon 2
ACAGCTTATCTCTTCAAACTGGCCTTATTGGAATCGGACAGAAGGGGCTGATCACTTTTTTGTAGTGCCCCATGACTTTGGGGCGTGCTTCCATTACCAAgtaagaaacttcaatttcttttgtcacccagtactcccccacattcattcgtttggatagtctgcttgaatgtgctcttgaaccaactggcccagatttagtttttcagagaggcctctggctagtgtcttttcttcctaaactcattattcactttcactgggcctctgttcatgtccattataacag
 ||||||||  |||| || ||||| || |||||||| |||||||| || || ||||| ||||| ||||| ||||||||||| || || |||||||| |||||||  ||    |   |||||| |||  |  |  | |     || | |  ||  |  | |  |||||||       |||  ||  |||   | | ||   | | | |                                                                                  
TCAGCTTATTGCTTCCAATTGGCCATACTGGAATCGCACAGAAGGAGCAGACCACTTCTTTGTTGTGCCTCATGACTTTGGAGCCTGTTTCCATTATCAAgtaaacaat---agaatcttttctcagtctctttttctttctatcc-taagtaggctttgcttgcttgatca-atacttctac--actattctaaatgatggtgtgc----------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110702747|gb|EE078988.1|EE078988
EST:     ATCACTTTTTTGTAGTGCCCCATGACTTTGGGGCGTGCTTCCATTACCAA                         GAAGAGAAAGCTATTGAAAGAGGAATTCTTCACTTGCTCCAGCGTGCCACC
genomic: ATCACTTTTTTGTAGTGCCCCATGACTTTGGGGCGTGCTTCCATTACCAAgtaagaaact ... attataacagGAAGAGAAAGCTATTGAAAGAGGAATTCTTCACTTGCTCCAGCGTGCCACC
EST: gi|110718481|gb|EE095362.1|EE095362
EST:     ATCACTTTTTTGTAGTGCCCCATGACTTTGGGGCGTGCTTCCATTACCAA                         GAAGAGAAAGCTATTGAAAGAGGAATTCTTCACTTGCTCCAGCGTGCCACC
genomic: ATCACTTTTTTGTAGTGCCCCATGACTTTGGGGCGTGCTTCCATTACCAAgtaagaaact ... attataacagGAAGAGAAAGCTATTGAAAGAGGAATTCTTCACTTGCTCCAGCGTGCCACC