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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGATGCTTCTTGACTGCAATCCATGTTTAGCCAAATATTCCACCTTCGGTGGACTCAATTCGCCTCTCCATTTCGCAGCCGCGAAGGGCCACAATGAGgtcgttttccgcttctcactcctttgatactcactgattcatcgtttttttgacccggtaaagtgttgtacttgcgttgattttttttcctggttttgtgttgttgttgagtag

Basic information

species Vitis vinifera
transcript Vv16s0100g00690.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0100g00690.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA20G29590.1 (Glycine max), 5'ss of exon 1
CAAGATGCTTCTTGACTGCAATCCATGTTTAGCCAAATATTCCACCTTCGGTGGACTCAATTCGCCTCTCCATTTCGCAGCCGCGAAGGGCCACAATGAGgtcgttttccgcttctcactcctttgatactcactgattcatcgtttttttgacccggtaaagtgttgtacttgcgttgattttttttcctggttttgtgttgttgttgagtag
 |||||||||||  ||||||| || ||| | ||||| ||||| || |||||||| |||||||| ||||||||||| ||||| || || |||||||| ||||||  |||     | |||||  ||| | |    || || || |     ||| |     |    | || | ||   |||| |||| | |                          
GAAGATGCTTCTGAACTGCAACCCGTGTCTCGCCAAGTATTCTACTTTCGGTGGCCTCAATTCCCCTCTCCATTTTGCAGCTGCCAAAGGCCACAACGAGgtcccttta----tttcactttttttacat---ctaatccaac---cctttaatttatt----tatttttctc-tgttggttttctgttag-----------------------

upper sequence: Vv16s0100g00690.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA10G38270.1 (Glycine max), 5'ss of exon 1
CAAGATGCTTCTTGACTGCAATCCATGTTTAGCCAAATATTCCACCTTCGGTGGACTCAATTCGCCTCTCCATTTCGCAGCCGCGAAGGGCCACAATGAGgtcgttttccgcttctcactcctttgatactcactgattcatcgtttttttgacccggtaaagtgttgtacttgcgttgattttttttcctggttttgtgttgttgttgagtag
  ||||||||||  ||||||| || ||| | ||||| ||||| || |||||||| |||||||| ||||||||||| ||||| || || |||||||| ||||||  |||     | |||||  ||  ||     || || ||   |  | |       | ||    || |||||       | ||| |    |||||| ||||            
GCAGATGCTTCTGAACTGCAACCCGTGTCTCGCCAAGTATTCTACTTTCGGTGGCCTCAATTCCCCTCTCCATTTTGCAGCTGCCAAAGGCCACAACGAGgtcccttta----tttcactttttatat-----ctaatccaatataatctaat----gcaaccctttttacttattcatttatttctgttgggttttctgttag----------

upper sequence: Vv16s0100g00690.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT5G07270.1 (Arabidopsis thaliana), 5'ss of exon 1
CAAGATGCTTCTTGACTGCAATCCATGTTTAGCCAAATATTCCACCTTCGGTGGACTCAATTCGCCTCTCCATTTCGCAGCCGCGAAGGGCCACAATGAGgtcg-ttttccgcttctcactcctttgatactcactgattcatcgtttttttgacccggtaaagtgttgtacttgcgttgattttttttcctggttttgtgttgttgttgagtag
|||||||||||| || |||||||||||| | ||||| ||||| || |||||||| || ||||| ||| | |||||||| || || || ||||| || |||||   |||| | ||  ||| | ||   |   | |||| |   |||  ||||| |     |||||| || | |||     ||| | |  |  | |                     
CAAGATGCTTCTCGATTGCAATCCATGTCTCGCCAAGTATTCAACTTTCGGTGGTCTTAATTCTCCTTTGCATTTCGCTGCAGCTAAAGGCCATAACGAGgtttctttttcactcttcattgctcataattttactgttc--tcgaatttttaat---ataaagttttct-cttttaccgatatgtgatgttag---------------------