Sequence
atgc intronic sequence ATGC exonic sequenceCCCATTTTCTGTGGTAACTTTGATTACGATGCAAGACAGTCTGATTTGGAGCGACTTTTCAGAAGATATGGGAAGGTTGATAGAGTTGATATGAAGACTGgtatgtggtttctccttggaatgtttctttccttttatttgattattgcttatttgtaaaattgatctcttcaataatctgtcaacggctatgcttattt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv16s0100g00450.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA20G29460.1 (Glycine max), 5'ss of exon 2
CCCATTTTCTGTGGTAACTTTGATTACGATGCAAGACAGTCTGATTTGGAGCGACTTTTCAGAAGATATGGGAAGGTTGATAGAGTTGATATGAAGACTGgtatgtggtttctccttggaatgtttctttccttttatttgattattgcttatttgtaaaattgatctcttcaataatctgtcaacggctatgcttattt--------
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CCTATTTTCTGTGGAAATTTTGAATATGATGCCCGGCAGTCAGAGCTGGAGCGGCTTTTTAGACGATATGGGAAGGTTGATAGGGTGGATATGAAGTCTGgtaagttttttcctttt----tcttttcattctcttattgtaa-attgtatattt-tagggtggatgactt-aatagcc-gtcaatccttttgtttatttttgttggt
upper sequence: Vv16s0100g00450.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA10G38400.1 (Glycine max), 5'ss of exon 3
CCCATTTTCTGTGGTAACTTTGATTACGATGCAAGACAGTCTGATTTGGAGCGACTTTTCAGAAGATATGGGAAGGTTGATAGAGTTGATATGAAGACTGgtatgtggtttctccttggaatgtttctttccttttatttgattattgcttatttgtaaaattgatctcttcaataatctgtcaacggctatgcttattt--------
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CCTATTTTCTGTGGAAATTTTGAATATGATGCCCGGCAGTCAGAGCTGGAGCGGCTTTTTAGACGATATGGGAAGGTTGATAGGGTGGATATGAAGTCTGgtaagttttttccttttt---cttttcattctctttttgtaa--attgtatattt-tagggtggatgattt-aatagcc-atcaatccttttgtttatttttgttggtMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|294964582|gb|GW838385.1|GW838385EST: GCGACTTTTCAGAAGATATGGGAAGGTTGATAGAGTTGATATGAAGACTG GATTTGCCTTTATATATATGGAGGATGAAAGGGATGCTGAGGATGCAATTA
genomic: GCGACTTTTCAGAAGATATGGGAAGGTTGATAGAGTTGATATGAAGACTGgtatgtggtt ... tcgattgtagGATTTGCCTTTATATATATGGAGGATGAAAGGGATGCTGAGGATGCAATTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CCCATTTTCTGTGGTAACTTTGATTACGATGCAAGACAGTCTGATTTGGAGCGACTTTTCAGAAGATATGGGAAGGTTGATAGAGTTGATATGAAGACTGgtatgtggtttctccttggaatgtttctttccttttatttgattattgcttatttgtaaaattgatctcttcaataatctgtcaacggctatgcttattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaattga