Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCACTGTATGCTTGCTAGGGAAGAAGAAAGAGAGGAACTTGGTGACAAGCCTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatattttacttacatcggaacttaggttgattcttaaatgtatgtacaatatacttattttgaatgagtgttattcatgttctcag

Basic information

species Vitis vinifera
transcript Vv16s0100g00360.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0100g00360.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA09G27200.1 (Glycine max), 5'ss of exon 1
CCACTGTATGCTTGCTAGGGAAGAAGAAAGAGAGGAACTTGGTGACAAGCCTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatattttacttacatcggaacttaggt--tgattcttaaatgtatgtacaatatacttatt-ttgaatgagt--gttattcatgttctcag
  |||||||||| ||||| || |||||| ||    ||||||| |||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||  ||  |     ||   ||   |  ||  ||  | || ||   |||| |||      | || ||| | |  ||  |  | |||  ||| | ||||
TTACTGTATGCTAGCTAGAGAGGAAGAACGAACAAAACTTGGCGACAAGCCTGTCAAGTATCATGGAAAATGGCCATTCCGTCGTGTTTATGGAATTCAGgttctttcacgaatctcctataaaaggttgagtggtaatgctgctatgtttgtttcggtttctgattgtagtgtggatatgctatatatgatttcag

upper sequence: Vv16s0100g00360.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA16G32340.1 (Glycine max), 5'ss of exon 1
CCACTGTATGCTTGCTAGGGAAGAAGAAAGAGAGGAACTTGGTGACAAGCCTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatattttacttacatcggaacttaggttg----attcttaaatgtatgtacaat-atacttattttgaatgagtgttattcatgttctcag
  ||||||||||  |||| || |||||||||    |||||||||||||||||||||| ||||||||||||||||||||||  ||||| ||||||||||||||  ||  ||  | ||   ||   |  ||   | |    | |  ||| | | | |    |  |  || |  ||      || |||  ||| | ||||
TTACTGTATGCTATCTAGAGAGGAAGAAAGAACAAAACTTGGTGACAAGCCTGTCAAGTATCATGGAAAATGGCCATTCCATCGTGTTTATGGAATTCAGgttctttcatgattctcctatgaaaggttgaatggtattactgctaagtttgtttcggtttgtgattgtggtgtggatatgctatatatgatttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349819429|gb|FQ412323.1|FQ412323
EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
EST: gi|351043645|gb|FQ451972.1|FQ451972
EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
EST: gi|352798608|gb|FQ480633.1|FQ480633
EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCC-TTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
EST: gi|352794419|gb|FQ481650.1|FQ481650
EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCC-TTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
EST: gi|349818330|gb|FQ409105.1|FQ409105
EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
EST: gi|351045110|gb|FQ449364.1|FQ449364
EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
EST: gi|351048854|gb|FQ449722.1|FQ449722
EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCCCTT-CTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
EST: gi|349818334|gb|FQ409109.1|FQ409109
EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
EST: gi|351038013|gb|FQ460755.1|FQ460755
EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
EST: gi|349817999|gb|FQ407988.1|FQ407988
EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
EST: gi|349823340|gb|FQ402539.1|FQ402539
EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
EST: gi|349809592|gb|FQ414482.1|FQ414482
EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
EST: gi|352789874|gb|FQ478689.1|FQ478689
EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCC-TTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
EST: gi|349818035|gb|FQ408024.1|FQ408024
EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
EST: gi|349828273|gb|FQ416226.1|FQ416226
EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
EST: gi|349821434|gb|FQ411055.1|FQ411055
EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
EST: gi|349817351|gb|FQ405355.1|FQ405355
EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
EST: gi|349813308|gb|FQ411548.1|FQ411548
EST:     CTGTCAAATATCAAGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTTAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
EST: gi|349818257|gb|FQ409032.1|FQ409032
EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
EST: gi|351042391|gb|FQ442858.1|FQ442858
EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCC-TTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
EST: gi|352786093|gb|FQ481888.1|FQ481888
EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCC-TTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
EST: gi|349808974|gb|FQ406824.1|FQ406824
EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
EST: gi|351034938|gb|FQ458295.1|FQ458295
EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCC-TTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
EST: gi|71862086|gb|DT011141.1|DT011141
EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
EST: gi|349822179|gb|FQ412443.1|FQ412443
EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
EST: gi|351036803|gb|FQ457516.1|FQ457516
EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
EST: gi|351051872|gb|FQ455286.1|FQ455286
EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
EST: gi|349811218|gb|FQ406206.1|FQ406206
EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTCTGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
EST: gi|351044833|gb|FQ449087.1|FQ449087
EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
EST: gi|351032589|gb|FQ458954.1|FQ458954
EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCCCTT-CTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
EST: gi|351016613|gb|FQ424040.1|FQ424040
EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
EST: gi|349808119|gb|FQ403306.1|FQ403306
EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
EST: gi|351055026|gb|FQ440365.1|FQ440365
EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCC-TTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
EST: gi|351037018|gb|FQ460728.1|FQ460728
EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
EST: gi|351044150|gb|FQ452823.1|FQ452823
EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCC-TTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
EST: gi|351026218|gb|FQ428230.1|FQ428230
EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
EST: gi|351036292|gb|FQ458667.1|FQ458667
EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
EST: gi|349826321|gb|FQ416126.1|FQ416126
EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
EST: gi|351012102|gb|FQ429908.1|FQ429908
EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
EST: gi|351048352|gb|FQ449444.1|FQ449444
EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
EST: gi|351053328|gb|FQ459196.1|FQ459196
EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCC-TTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
EST: gi|351032587|gb|FQ458952.1|FQ458952
EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCCCTT-CTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
EST: gi|349823832|gb|FQ415243.1|FQ415243
EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
EST: gi|349811033|gb|FQ406021.1|FQ406021
EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
EST: gi|351032920|gb|FQ461809.1|FQ461809
EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCC-TTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
EST: gi|349812048|gb|FQ410845.1|FQ410845
EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
EST: gi|351034656|gb|FQ458013.1|FQ458013
EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
EST: gi|349816433|gb|FQ403808.1|FQ403808
EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
EST: gi|351052622|gb|FQ452534.1|FQ452534
EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
EST: gi|351052437|gb|FQ452470.1|FQ452470
EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCC-TTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
EST: gi|351034232|gb|FQ463166.1|FQ463166
EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
EST: gi|351057404|gb|FQ454086.1|FQ454086
EST:     CTGTCAAATATCAAGGAAAATGGCCATTCCGGCATGTATATGGAATTCAC                         GAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
EST: gi|351035263|gb|FQ458620.1|FQ458620
EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCC-TTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
EST: gi|351037639|gb|FQ462623.1|FQ462623
EST:     CTGTCAGATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
EST: gi|349818914|gb|FQ411609.1|FQ411609
EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATTGAATTCAG                         GAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
EST: gi|351045033|gb|FQ449287.1|FQ449287
EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
EST: gi|351032351|gb|FQ461604.1|FQ461604
EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
EST: gi|351031804|gb|FQ460061.1|FQ460061
EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
EST: gi|351054983|gb|FQ440322.1|FQ440322
EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCC-TTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
EST: gi|352786420|gb|FQ479029.1|FQ479029
EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCC-TTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
EST: gi|351041274|gb|FQ447401.1|FQ447401
EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
EST: gi|351025283|gb|FQ434296.1|FQ434296
EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
EST: gi|351055550|gb|FQ442346.1|FQ442346
EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCC-TTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
EST: gi|349820599|gb|FQ404094.1|FQ404094
EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
EST: gi|349811406|gb|FQ407632.1|FQ407632
EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCTGTTTCTGTTGCCCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
EST: gi|349824465|gb|FQ413132.1|FQ413132
EST:     CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAG                         GAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT
genomic: CTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatat ... atgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCACTGTATGCTTGCTAGGGAAGAAGAAAGAGAGGAACTTGGTGACAAGCCTGTCAAATATCATGGAAAATGGCCATTCCGGCGTGTATATGGAATTCAGgtctttatattttacttacatcggaacttaggttgattcttaaatgtatgtacaatatacttattttgaatgagtgttattcatgttctcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CATGGA