1 5' 3' | 2 5' 3' |
GGATGATCACAAGGTGGACATGCACACTGGATGTACATTTAACCATCGATATGTAAAATCCAATCCCCGTGAAGTAGAAAATGCTACCTGGATGCTAACAgtaagtgcagtatcactttttaaaattttcaatttggatttgttttctctccaagtatagaaattagaaattatataacttgccttggtacacttgacct...
species | Vitis vinifera |
transcript | Vv16s0098g01850.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ATGTAAAATCCAATCCCCGTGAAGTAGAAAATGCTACCTGGATGCTAACA GTCTTCCATTGTTTTGGTCAATATTTTTGCCTTCACTTCGAAGCCTTTCAAEST: gi|110715453|gb|EE093518.1|EE093518
genomic: ATGTAAAATCCAATCCCCGTGAAGTAGAAAATGCTACCTGGATGCTAACAgtaagtgcag ... gtttcttcagGTCTTCCATTGTTTTGGTCAATATTTTTGCCTTCACTTCGAAGCCTTTCAA
EST: ATGTAAAATCCAATCCCCGTGAAGTAGAAAATGCTACCTGGATGCTAACA GTCTTCCATTGTTTTGGTCAATATTTTTGCCTTCACTTCGAAGCCTTTCAAEST: gi|30299475|gb|CB976269.1|CB976269
genomic: ATGTAAAATCCAATCCCCGTGAAGTAGAAAATGCTACCTGGATGCTAACAgtaagtgcag ... gtttcttcagGTCTTCCATTGTTTTGGTCAATATTTTTGCCTTCACTTCGAAGCCTTTCAA
EST: ATGTAAAATCCAATCCCCGTGAAGTAGAAAATGCTACCTGGATGCTAACA GTCTTCCATTGTTTTGGTCAATATTTTTGCCTTCACTTCGAAGCCTTTCAA
genomic: ATGTAAAATCCAATCCCCGTGAAGTAGAAAATGCTACCTGGATGCTAACAgtaagtgcag ... gtttcttcagGTCTTCCATTGTTTTGGTCAATATTTTTGCCTTCACTTCGAAGCCTTTCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGATGATCACAAGGTGGACATGCACACTGGATGTACATTTAACCATCGATATGTAAAATCCAATCCCCGTGAAGTAGAAAATGCTACCTGGATGCTAACAgtaagtgcagtatcactttttaaaattttcaatttggatttgttttctctccaagtatagaaattagaaattatataacttgccttggtacacttgacct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttagaaa