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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGACAAAGATAATGCAAGGAAGGATGAGATTGCAGCGCTTGGGGGTCAGACAGCAACCGGAACAAACGTGTTTAGTGCATTTTATGACAGATTGAAAGAGgtaattattaggtgttctttttctttggaaggggaaaaataaaacaagctgtgtgtatgactgtgttcttgcatgattatatgttgtatttttagtgaaatatttagttgtatatgcag

Basic information

species Vitis vinifera
transcript Vv16s0098g00320.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0098g00320.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA04G41530.1 (Glycine max), 5'ss of exon 2
AGACAAAGATAATGCAAGGAAGGATGAGATTGCAGCGCTTGGGGGTCAGACAGCAACCGGAACAAACGTGTTTAGTGCATTTTATGACAGATTGAAAGAGgtaattattaggtgttctttttctttggaaggggaaaaataaaacaagctgtgtgtatgactgtgttcttgcatgattatatgttgtattt-ttagtgaaatatttagttgtatatgcag
||| |  || ||||||||||||||||||||||| || || || ||||| || || || ||||  ||||| || ||||| |||||||| ||| | |||||||||  |   |  | || |||   ||               |||||  |   ||| | |  |  | || ||| |       ||||| || || ||| |    || | || || ||      
AGATAGCGACAATGCAAGGAAGGATGAGATTGCCGCACTCGGAGGTCAAACTGCCACTGGAATTAACGTTTTCAGTGCCTTTTATGATAGACTCAAAGAGgtagct--catttattttttcggttc--------------aaaacttggcttgtatttctcattttttttggaaagcgcgatgttttagttgttaatttgttagtgagatgcattc----

upper sequence: Vv16s0098g00320.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT5G06160.1 (Arabidopsis thaliana), 5'ss of exon 2
AGACAAAGATAATGCAAGGAAGGATGAGATTGCAGCGCTTGGGGGTCAGACAGCAACCGGAACAAACGTGTTTAGTGCATTTTATGACAGATTGAAAGAGgtaattattaggtgttcttt-----ttctttggaaggggaaaaataaaacaagctgtgtgtatgactgtgttcttgcatgattatatgttgtatttttagtgaaatatttagttgtatatgcag
||| || |||   ||  || | |||||||||||||||||||| || ||||| || || || ||||| |||||||||| |||||| ||  | |||||||||||  || ||   | | ||||     ||| ||||           ||||||  ||  | ||  |  || |       | ||  | ||  ||  | |||  |||                      
AGATAAGGATGGGGCGTGGGATGATGAGATTGCAGCGCTTGGTGGCCAGACTGCGACAGGGACAAATGTGTTTAGTGAATTTTACGATCGTTTGAAAGAGgt--ttgttctttatcctttgcaccttccttggtcttttttccctaaaacttgcc-tatggttctctataccaagacttggctttacttt--agtttctgtgggt-------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27586909|gb|CB009604.1|CB009604
EST:     CAGCAACCGGAACAAACGTGTTTAGTGCATTTTATGACAGATTGAAAGAG                         ATTCGTGAGTACCATAGAAAACATCAAGCTGCACGTGTTGTTGATGCTAAT
genomic: CAGCAACCGGAACAAACGTGTTTAGTGCATTTTATGACAGATTGAAAGAGgtaattatta ... gtatatgcagATTCGTGAGTACCATAGAAAACATCAAGCTGCACGTGTTGTTGATGCTAAT
EST: gi|71858262|gb|DT007317.1|DT007317
EST:     CAGCAACCGGAACAAACGTGTTTAGTGCATTTTATGACAGATTGAAAGAG                         ATTCGTGAGTACCATAGAAAACATCAAGCTGCACGTGTTGTTGATGCTAAT
genomic: CAGCAACCGGAACAAACGTGTTTAGTGCATTTTATGACAGATTGAAAGAGgtaattatta ... gtatatgcagATTCGTGAGTACCATAGAAAACATCAAGCTGCACGTGTTGTTGATGCTAAT
EST: gi|351040645|gb|FQ438189.1|FQ438189
EST:     CAGCAACCGGAACAAACGTGTTTAGTGCATTTTATGACAGATTGAAAGAG                         ATTCGTGAGTACCATAGAAAACATCAAGCTGCACGTGTTGTTGATGCTAAT
genomic: CAGCAACCGGAACAAACGTGTTTAGTGCATTTTATGACAGATTGAAAGAGgtaattatta ... gtatatgcagATTCGTGAGTACCATAGAAAACATCAAGCTGCACGTGTTGTTGATGCTAAT
EST: gi|351026899|gb|FQ436552.1|FQ436552
EST:     CAGCAACCGGAACAAACGTGTTTAGTGCATTTTATGACAGATTGAAAGAG                         ATTTGTGAGTACCATAGAAAACATCAAGCTGCACGTGTTGTTGATGCTAAT
genomic: CAGCAACCGGAACAAACGTGTTTAGTGCATTTTATGACAGATTGAAAGAGgtaattatta ... gtatatgcagATTCGTGAGTACCATAGAAAACATCAAGCTGCACGTGTTGTTGATGCTAAT
EST: gi|351028525|gb|FQ444806.1|FQ444806
EST:     CAGCAACCGGAACAAACGTGTTTAGTGCATTTTATGACAGATTGAAAGAG                         ATTCGTGAGTACCATAGAAAACATCAAGCTGCACGTGTTGTTGATGCTAAT
genomic: CAGCAACCGGAACAAACGTGTTTAGTGCATTTTATGACAGATTGAAAGAGgtaattatta ... gtatatgcagATTCGTGAGTACCATAGAAAACATCAAGCTGCACGTGTTGTTGATGCTAAT
EST: gi|351021577|gb|FQ429681.1|FQ429681
EST:     CAGCAACCGGAACATACGTGTTTAGTGCATTTTATGACAGATTGAAAGAG                         ATTCGTGAGTACCATAGAAAACATCAAGCTGCACGTGTTGTTGATGCTAAT
genomic: CAGCAACCGGAACAAACGTGTTTAGTGCATTTTATGACAGATTGAAAGAGgtaattatta ... gtatatgcagATTCGTGAGTACCATAGAAAACATCAAGCTGCACGTGTTGTTGATGCTAAT
EST: gi|37189179|gb|CF608528.1|CF608528
EST:     CGGCAACCGGAACAAATGTGTTTAGTGCATTTTATGACAGATTGAAAGAG                         ATTCGTGAGTACCATAGAAAGCATCAAGCTGCACGTGTTGTTGATGCTAAT
genomic: CAGCAACCGGAACAAACGTGTTTAGTGCATTTTATGACAGATTGAAAGAGgtaattatta ... gtatatgcagATTCGTGAGTACCATAGAAAACATCAAGCTGCACGTGTTGTTGATGCTAAT
EST: gi|161715191|gb|FC066437.1|FC066437
EST:     CAGCAACCGGAACAAACGTGTTTAGTGCATTTTATGACAGATTGAAAGAG                         ATTCGTGAGTACCATAGAAAACATCAAGCTGCACGTGTTGTTGATGCTAAT
genomic: CAGCAACCGGAACAAACGTGTTTAGTGCATTTTATGACAGATTGAAAGAGgtaattatta ... gtatatgcagATTCGTGAGTACCATAGAAAACATCAAGCTGCACGTGTTGTTGATGCTAAT