Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTGTTGCCTAAAAGCTAAGGCTTCGGCCCCTGAGAATGATGCAAAATGCCATTCAACTGTTGTTTCTGGGTGGTTCTCAGAACCTCAGTCATGCTCTGgtcattatcaatttctatttttgctttattgttttttaattgatatattctacagaattttccttggattttatataagcatgtcaattggtgtaaatggatcttttttttacttcctttcttccttgtcttttttattccag

Basic information

species Vitis vinifera
transcript Vv16s0050g02670.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0050g02670.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA06G13210.2 (Glycine max), 5'ss of exon 2
TCTTGTTGCCTAAAAGCTAAGGCTTCGGCCCCTGAGAATGATGCAAAATGCCATTCAACTGTTGTTTCTGGGTGGTTCTCAGAACCTCAGTCATGCTCTGgtcattatcaatttctatttttgctttattgttttttaattgatatattctacagaattttccttggattttatataagcatgtcaattggtgtaaatggatcttttttttacttcctttcttccttgtcttttttattccag
|||||||| || || |||||||||||   |||||||  ||| || || |||||||| |||||||||||||||||||||||||   ||||  | ||||||||||||||||  ||   |||| |  | | |  ||||  || |  |  |||| ||      || |  | |||      | || ||     | | || || ||||| || || |   |   |||| | || |  |||  |      
TCTTGTTGTCTGAAGGCTAAGGCTTCAATCCCTGAGTCTGAGGCGAAGTGCCATTCTACTGTTGTTTCTGGGTGGTTCTCAGCTTCTCAAACTTGCTCTGgtcattatctgtt---atttgttttctgtatttttccaact--tccattccac------ttacaagaatt------aggcctgattgcttgagtgaaaggatcattgttgtttattacttctacttttttctttacag-----

upper sequence: Vv16s0050g02670.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA04G41600.1 (Glycine max), 5'ss of exon 2
TCTTGTTGCCTAAAAGCTAAGGCTTCGGCCCCTGAGAATGATGCAAAATGCCATTCAACTGTTGTTTCTGGGTGGTTCTCAGAACCTCAGTCATGCTCTGgtcattatcaatttctatttttgctttattgttttttaattgatatattctacagaattttccttggattttatataagcatgtcaattggtgtaaatggatcttttttttacttcctttcttccttgtcttttttattccag
|||||||| || || || ||||||||   ||| |||   || ||||||| |||||| |||||||||||||||||||||||||   ||||  | ||||||||||||||||  ||  |  |||| ||||||| ||   |      |  | |    ||||||   | ||  |  |  |     | |   | || |||  |||   |||| ||   |||  ||||||  | |               
TCTTGTTGTCTGAAGGCCAAGGCTTCAATCCCCGAGTCAGAGGCAAAATTCCATTCCACTGTTGTTTCTGGGTGGTTCTCAGCTTCTCAAACTTGCTCTGgtcattatctgttatttgtttt-ctttatttttgactt-ccatttcacttgcaagaattagacctgattgcttgagtgaaaggatcactgatgtttatga--ctttcttccgctt--tttctttatag---------------

upper sequence: Vv16s0050g02670.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT5G53120.4 (Arabidopsis thaliana), 5'ss of exon 3
TCTTGTTGCCTAAAAGCTAAGGCTTCGGCCCCTGAGAATGATGCAAAATGCCATTCAACTGTTGTTTCTGGGTGGTTCTCAGAACCTCAGTCATGCTCTGgtcat-tatcaatttctatttttgctttattgttttttaattgatatattctacagaattttccttggattttatataagcatgtcaattgg-tgtaaatggatcttttttttacttcctttcttccttgtcttttttattccag
||||||||||| || |||| ||| |  |  |||||| ||||||| || || || || |||||||||||||||||||| || ||||||||  |  |||||||| |    |   ||||| || |||       | |     |||    ||      |    ||   |||||| || |       | | |||||| || |                                                
TCTTGTTGCCTTAAGGCTATGGCATGTGTACCTGAGGATGATGCTAAGTGTCACTCCACTGTTGTTTCTGGGTGGTTTTCGGAACCTCACCCTCGCTCTGgttagactttgttttcttttcttgtcaagaagctaccctattttcttagatccgatctcttattttggatcttgt-------tcttaattggatgcag-----------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110686791|gb|EE064831.1|EE064831
EST:     CCATTCAACTGTTGTTTCTGGGTGGTTCTCAGAACCTCAGTCATGCTCTG                         ATAAAGCTGGCAATCTGATGTATTTCAACAACCCGATGTGGCCTG
genomic: CCATTCAACTGTTGTTTCTGGGTGGTTCTCAGAACCTCAGTCATGCTCTGgtcattatca ... tttattccagATAAAGCTGGCAATCTGATGTATTTCAACAACCCGATGTGGCCTG
EST: gi|71872710|gb|DT021765.1|DT021765
EST:     CCATTCAACTGTTGTTTCTGGGTGGTTCTCAGAACCTCAGTCATGCTCTG                         ATAAAGCTGGCAATCTGATGTATTTCAACAACCCGATGTGGCCTG
genomic: CCATTCAACTGTTGTTTCTGGGTGGTTCTCAGAACCTCAGTCATGCTCTGgtcattatca ... tttattccagATAAAGCTGGCAATCTGATGTATTTCAACAACCCGATGTGGCCTG
EST: gi|161719336|gb|FC064840.1|FC064840
EST:     CCATTCAACCGTTGTTTCTGGGTGGTTCTCAGAACCTCAGTCATGCTCTG                         ATAAAGCTGGCAATCTGATGTATTTCAACAACCCGATGTGGCCTG
genomic: CCATTCAACTGTTGTTTCTGGGTGGTTCTCAGAACCTCAGTCATGCTCTGgtcattatca ... tttattccagATAAAGCTGGCAATCTGATGTATTTCAACAACCCGATGTGGCCTG