Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTCAACTGGCTCGTGCACTCTACCAGGATGCCGATATATATCTCTTGGATGACCCATTCAGTGCAGTTGATGCACATACTGCAACGAGTCTACTGAATgtagttatactttcctaacaccattagattttactccttgtttgctcactagcttgtgacaaagactaacttgttggtctttattattgcag

Basic information

species Vitis vinifera
transcript Vv16s0050g02280.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0050g02280.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G111903_T02 (Zea mays), 5'ss of exon 4
GATTCAACTGGCTCGTGCACTCTACCAGGATGCCGATATATATCTCTTGGATGACCCATTCAGTGCAGTTGATGCACATACTGCAACGAGTCTACTGAATgtagttatactttcctaacaccattagattttactccttgtttgctcactag--cttgtgacaaagactaacttgttggtctttattattgcag
  |||| || ||||||||| | |||||| |||| || || |||||| | |||||||| ||||| || |||||||| || || |||||||||||  | ||||||  | |        |||| |  |  |||  | |  || |      |||||  ||| | | |||  |||  || ||||               
TGTTCAGCTTGCTCGTGCATTGTACCAGAATGCAGACATCTATCTCCTTGATGACCCTTTCAGCGCTGTTGATGCCCACACAGCAACGAGTCTGTTTAATgtaagtgt--caaaaaaacagctgtgaattgaagtatttatc-atagactagtacttttaaaaaaatctattttattggcag------------