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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCATGGAGATCATGCATCTCATCAGAAGGTTATTGATTTGGTAAAAGAGTATAATGCACAATCCAAAGATAATGTCATTGCAATCATGCTTGATACCAAGgcaagttttctagttgttctttgtcctacttacattttatgttgctgcattcagttgcttaaattgaccagtttactaagttgttggaatgctcagataatacccttcatttagtggatcccttcttacttggcaattatcttgtttacttccttttctttgctaccag

Basic information

species Vitis vinifera
transcript Vv16s0050g02180.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0050g02180.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA10G37210.1 (Glycine max), 5'ss of exon 2
TCATGGAGATCATGCATCTCATCAGAAGGTTATTGATTTGGTAAAAGAGTATAATGCACAATCCAAAGATAATGTCATTGCAATCATGCTTGATACCAAGgcaagttttctagttgttctttgtcctacttacattttatgttgctgcattcagttgcttaaattgaccagtttactaagttgttggaatgctcagataatacccttcatttagtggatcccttcttacttggcaattatcttgtttacttccttttctttgctaccag
||||||||| ||||| |||||||||||  ||||||||||||| ||||| |||||||| |||||||| || ||||| |||||||| ||||||||||||||||  |   || |  |  | |||     || |  | ||| | | | ||   ||||  |    | |||     | | ||    | |||   ||| |||| | |||   || ||||      || ||| | |                                         
TCATGGAGACCATGCTTCTCATCAGAAAATTATTGATTTGGTTAAAGAATATAATGCTCAATCCAAGGACAATGTAATTGCAATTATGCTTGATACCAAGgtgataattatgttcttccttcaagttattagcttttaaggatactttgttcatat---cacatttctttggtcacagtttagttttcatg-tcagctgataa--ttaatttttc---tctcttttcag----------------------------------------

upper sequence: Vv16s0050g02180.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA20G30430.1 (Glycine max), 5'ss of exon 2
TCATGGAGATCATGCATCTCATCAGAAGGTTATTGATTTGGTAAAAGAGTATAATGCACAATCCAAAGATAATGTCATTGCAATCATGCTTGATACCAAGgcaagttttctagttgttctttgtcctacttacattttatgttgctgcattcagttgcttaaattgaccagtttactaagttgttggaatgctcagataatacccttcatttagtggatcccttcttacttggcaattatcttgtttacttccttttctttgctaccag
||| ||||| ||||| |||||||||||  ||||||||||||| ||||| |||||||| |||||||| || || || |||||||| ||||||||||||||||  |   ||    |  |||||     || |  | ||| |  || ||   |||   |    |  ||     | | ||    | |||   ||| |||| | |||   |||||||      || ||| | |                                         
TCACGGAGACCATGCTTCTCATCAGAAAATTATTGATTTGGTTAAAGAATATAATGCTCAATCCAAGGACAACGTAATTGCAATTATGCTTGATACCAAGgtgataattaagttctttcttcaagttattgccttttaagattactttgttcgtat---catgtttctttggtcacagtttagttttcatg-tcagctgataa--ttcatttttc---tctcttttcag----------------------------------------

upper sequence: Vv16s0050g02180.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA09G23150.1 (Glycine max), 5'ss of exon 2
TCATGGAGATCATGCATCTCATCAGAAGGTTATTGATTTGGTAAAAGAGTATAATGCACAATCCAAAGATAATGTCATTGCAATCATGCTTGATACCAAGgcaagttttctagttgttc-tttgtcctacttacattttatgttgctgcattcagttgcttaaattgaccagtttactaagttgttggaatgctcagataatacccttcatttagtggatcccttcttacttggcaattatcttgtttacttccttttctttgctaccag
||||||||| ||||| ||||||||||| |||||||| ||||| || || ||||||||         ||| ||||| ||||||||||||||||| || ||||   |||    |||| |||  |    | ||||   ||   | ||| |   ||   ||  ||   | |||  |  |     | | ||| | |  |    |  || |                                                                 
TCATGGAGACCATGCTTCTCATCAGAAAGTTATTGACTTGGTTAAGGAATATAATGCTTCTCATGGAGACAATGTGATTGCAATCATGCTTGACACAAAGgttggtt----agttcttcgctcaaacaacttgttttcctttttgttttgtttttttttttttttggacagggctgtgttgctcttgta-tatttgctttgtaac-----------------------------------------------------------------

upper sequence: Vv16s0050g02180.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA16G28980.1 (Glycine max), 5'ss of exon 2
TCATGGAGATCATGCATCTCATCAGAAGGTTATTGATTTGGTAAAAGAGTATAATGCACAATCCAAAGATAATGTCATTGCAATCATGCTTGATACCAAGgcaagttttctagttgttctttgtcctacttacattttatgttgctgcattcagttgcttaaattgaccagtttactaagt-tgttggaatgctcagataatacccttcatttagtggatcccttcttacttggcaattatcttgtttacttccttttctttgctaccag
|||||| || ||||| ||||||||||| |||||||| ||||| || |||||||||||        |||| ||||| ||||||||||||||||| || ||||   |||        |||||| |  | |   ||||||| | || ||   |||   |  ||| |  |     | | ||     |||  |  ||||  |  |  |   |  |||                                                          
TCATGGGGACCATGCTTCTCATCAGAAAGTTATTGACTTGGTTAAGGAGTATAATGCTTCTCATGAAGACAATGTGATTGCAATCATGCTTGACACAAAGgttggtta-------gttcttcgctcaa---acattttgttttcctt--ttcgtgtttttagacagg--gatctgctgttcatgtatgtttgctttgtcacaatgttgtattgg--------------------------------------------------------

upper sequence: Vv16s0050g02180.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT5G52920.1 (Arabidopsis thaliana), 5'ss of exon 2
TCATGGAGATCATGCATCTCATCAGAAGGTTATTGATTTGGTAAAAGAGTATAATGCACAATCCAAAGATAATGTCATTGCAATCATGCTTGATACCAAGgcaagttttctagttgttctttgtcctacttacattttatgttgctgcattcagttgcttaaattgaccagtttactaagttgttggaatgctcagataatacccttcatttagtggatcccttcttacttggcaattatcttgtttacttccttttctttgctaccag
||||||||||||||| || ||| ||||||||||||||||||| ||||| || ||||||||| | ||||| ||    ||||| ||||||||||| |||||||   ||||| |  ||  | ||| || || |||| ||    ||  ||   | ||  |       ||||| | ||   |   |||||   |                                                                                
TCATGGAGATCATGCTTCACATAAGAAGGTTATTGATTTGGTTAAAGAATACAATGCACAAACTAAAGACAACACTATTGCTATCATGCTTGACACCAAGgtttgtttt-tgtttcctatttatc-tatttac-ttgagagtctctatgtccatgtatcgcctttgacga-ttagtttcattgttcatag-------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110688927|gb|EE068039.1|EE068039
EST:     ATAATGCACAATCCAAAGATAATGTCATTGCAATCATGCTTGATACCAAG                         GGCCCTGAGGTCAGGAGTGGGGACTTGCCCCAGCCAATCATGTTAAAAAGT
genomic: ATAATGCACAATCCAAAGATAATGTCATTGCAATCATGCTTGATACCAAGgcaagttttc ... ttgctaccagGGCCCTGAGGTCAGGAGTGGGGACTTGCCCCAGCCAATCATGTTAAAAAGT