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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCATGGAGATCATGCATCTCATCAGAAGGTTATTGATTTGGTAAAAGAGTATAATGCACAATCCAAAGATAATGTCATTGCAATCATGCTTGATACCAAGgcaagttttctagttgttctttgtcctacttacattttatgttgctgcattcagttgcttaaattgaccagtttactaagttgttggaatgctcagataatacccttcatttagtggatcccttcttacttggcaattatcttgtttacttccttttctttgctaccag

Basic information

species Vitis vinifera
transcript Vv16s0050g02180.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0050g02180.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA10G37210.1 (Glycine max), 5'ss of exon 2
TCATGGAGATCATGCATCTCATCAGAAGGTTATTGATTTGGTAAAAGAGTATAATGCACAATCCAAAGATAATGTCATTGCAATCATGCTTGATACCAAGgcaagttttctagttgttctttgtcctacttacattttatgttgctgcattcagttgcttaaattgaccagtttactaagttgttggaatgctcagataatacccttcatttagtggatcccttcttacttggcaattatcttgtttacttccttttctttgctaccag
||||||||| ||||| ||||||||||| ||||||||||||| ||||| |||||||| |||||||| || ||||| |||||||| |||||||||||||||| | || | | | ||| || | | ||| | | | || |||| | | ||| | | || | ||| ||| |||| | ||| || |||| || ||| | |
TCATGGAGACCATGCTTCTCATCAGAAAATTATTGATTTGGTTAAAGAATATAATGCTCAATCCAAGGACAATGTAATTGCAATTATGCTTGATACCAAGgtgataattatgttcttccttcaagttattagcttttaaggatactttgttcatat---cacatttctttggtcacagtttagttttcatg-tcagctgataa--ttaatttttc---tctcttttcag----------------------------------------

upper sequence: Vv16s0050g02180.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA20G30430.1 (Glycine max), 5'ss of exon 2
TCATGGAGATCATGCATCTCATCAGAAGGTTATTGATTTGGTAAAAGAGTATAATGCACAATCCAAAGATAATGTCATTGCAATCATGCTTGATACCAAGgcaagttttctagttgttctttgtcctacttacattttatgttgctgcattcagttgcttaaattgaccagtttactaagttgttggaatgctcagataatacccttcatttagtggatcccttcttacttggcaattatcttgtttacttccttttctttgctaccag
||| ||||| ||||| ||||||||||| ||||||||||||| ||||| |||||||| |||||||| || || || |||||||| |||||||||||||||| | || | ||||| || | | ||| | || || ||| | | || | | || | ||| ||| |||| | ||| ||||||| || ||| | |
TCACGGAGACCATGCTTCTCATCAGAAAATTATTGATTTGGTTAAAGAATATAATGCTCAATCCAAGGACAACGTAATTGCAATTATGCTTGATACCAAGgtgataattaagttctttcttcaagttattgccttttaagattactttgttcgtat---catgtttctttggtcacagtttagttttcatg-tcagctgataa--ttcatttttc---tctcttttcag----------------------------------------

upper sequence: Vv16s0050g02180.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA09G23150.1 (Glycine max), 5'ss of exon 2
TCATGGAGATCATGCATCTCATCAGAAGGTTATTGATTTGGTAAAAGAGTATAATGCACAATCCAAAGATAATGTCATTGCAATCATGCTTGATACCAAGgcaagttttctagttgttc-tttgtcctacttacattttatgttgctgcattcagttgcttaaattgaccagtttactaagttgttggaatgctcagataatacccttcatttagtggatcccttcttacttggcaattatcttgtttacttccttttctttgctaccag
||||||||| ||||| ||||||||||| |||||||| ||||| || || |||||||| ||| ||||| ||||||||||||||||| || |||| ||| |||| ||| | | |||| || | ||| | || || || | ||| | | | | ||| | | | | || |
TCATGGAGACCATGCTTCTCATCAGAAAGTTATTGACTTGGTTAAGGAATATAATGCTTCTCATGGAGACAATGTGATTGCAATCATGCTTGACACAAAGgttggtt----agttcttcgctcaaacaacttgttttcctttttgttttgtttttttttttttttggacagggctgtgttgctcttgta-tatttgctttgtaac-----------------------------------------------------------------

upper sequence: Vv16s0050g02180.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA16G28980.1 (Glycine max), 5'ss of exon 2
TCATGGAGATCATGCATCTCATCAGAAGGTTATTGATTTGGTAAAAGAGTATAATGCACAATCCAAAGATAATGTCATTGCAATCATGCTTGATACCAAGgcaagttttctagttgttctttgtcctacttacattttatgttgctgcattcagttgcttaaattgaccagtttactaagt-tgttggaatgctcagataatacccttcatttagtggatcccttcttacttggcaattatcttgtttacttccttttctttgctaccag
|||||| || ||||| ||||||||||| |||||||| ||||| || ||||||||||| |||| ||||| ||||||||||||||||| || |||| ||| |||||| | | | ||||||| | || || ||| | ||| | | | | || ||| | |||| | | | | |||
TCATGGGGACCATGCTTCTCATCAGAAAGTTATTGACTTGGTTAAGGAGTATAATGCTTCTCATGAAGACAATGTGATTGCAATCATGCTTGACACAAAGgttggtta-------gttcttcgctcaa---acattttgttttcctt--ttcgtgtttttagacagg--gatctgctgttcatgtatgtttgctttgtcacaatgttgtattgg--------------------------------------------------------

upper sequence: Vv16s0050g02180.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT5G52920.1 (Arabidopsis thaliana), 5'ss of exon 2
TCATGGAGATCATGCATCTCATCAGAAGGTTATTGATTTGGTAAAAGAGTATAATGCACAATCCAAAGATAATGTCATTGCAATCATGCTTGATACCAAGgcaagttttctagttgttctttgtcctacttacattttatgttgctgcattcagttgcttaaattgaccagtttactaagttgttggaatgctcagataatacccttcatttagtggatcccttcttacttggcaattatcttgtttacttccttttctttgctaccag
||||||||||||||| || ||| ||||||||||||||||||| ||||| || ||||||||| | ||||| || ||||| ||||||||||| ||||||| ||||| | || | ||| || || |||| || || || | || | ||||| | || | ||||| |
TCATGGAGATCATGCTTCACATAAGAAGGTTATTGATTTGGTTAAAGAATACAATGCACAAACTAAAGACAACACTATTGCTATCATGCTTGACACCAAGgtttgtttt-tgtttcctatttatc-tatttac-ttgagagtctctatgtccatgtatcgcctttgacga-ttagtttcattgttcatag-------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110688927|gb|EE068039.1|EE068039
EST:     ATAATGCACAATCCAAAGATAATGTCATTGCAATCATGCTTGATACCAAG                         GGCCCTGAGGTCAGGAGTGGGGACTTGCCCCAGCCAATCATGTTAAAAAGT
genomic: ATAATGCACAATCCAAAGATAATGTCATTGCAATCATGCTTGATACCAAGgcaagttttc ... ttgctaccagGGCCCTGAGGTCAGGAGTGGGGACTTGCCCCAGCCAATCATGTTAAAAAGT