1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AGGCTGTTGCTGATGCAAACAGAGCAATTGAGTTGGACCCATCAATGTCTAAAGCATTCTTGCGGAAAGGgtaagagccttggactttgcaaattgatatgtataattattttgtcatcagtgatggtgccaattcattcagcagcatttgacatatgctttcagtgtaa...
species | Vitis vinifera |
transcript | Vv16s0050g01510.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AGAGCAATTGAGTTGGACCCATCAATGTCTAAAGCATTCTTGCGGAAAGG CACTGCATGTATGAAGCTTGAGGAATATCAAACTGCTAAGGCAGCCTTCGAEST: gi|71859342|gb|DT008397.1|DT008397
genomic: AGAGCAATTGAGTTGGACCCATCAATGTCTAAAGCATTCTTGCGGAAAGGgtaagagcct ... tgtttcacagCACTGCATGTATGAAGCTTGAGGAATATCAAACTGCTAAGGCAGCCTTCGA
EST: AGAGCAATTGAGTTGGACCCATCAATGTCTAAAGCATTCTTGCGGAAAGG CACTGCATGTATGAAGCTTGAGGAATATCAAACTGCTAAGGCAGCCTTCGAEST: gi|161710647|gb|FC059030.1|FC059030
genomic: AGAGCAATTGAGTTGGACCCATCAATGTCTAAAGCATTCTTGCGGAAAGGgtaagagcct ... tgtttcacagCACTGCATGTATGAAGCTTGAGGAATATCAAACTGCTAAGGCAGCCTTCGA
EST: AGAGCAATTGAGTTGGACCCATCAATGTCTAAAGCATTCTTGCGGAAAGG CACTGCATGTATGAAGCTTGAGGAATATEST: gi|110733197|gb|EE109180.1|EE109180
genomic: AGAGCAATTGAGTTGGACCCATCAATGTCTAAAGCATTCTTGCGGAAAGGgtaagagcct ... tgtttcacagCACTGCATGTATGAAGCTTGAGGAATAT
EST: AGAGCAATTGAGTTGGACCCATCAATGTCTAAAGCATTCTTGCGGAAAGG CACTGCATGTATGAAGCTTGAGGAATATCAAACTGCTAAGGCAGCCTTCGAEST: gi|29782866|gb|CB348559.2|CB348559
genomic: AGAGCAATTGAGTTGGACCCATCAATGTCTAAAGCATTCTTGCGGAAAGGgtaagagcct ... tgtttcacagCACTGCATGTATGAAGCTTGAGGAATATCAAACTGCTAAGGCAGCCTTCGA
EST: AGAGCAATTGAGTTGGACCCATCAATGTCTAAAGCATTCTTGCGGAAAGG TACTGCATGTATGAAGCTTGAGGAATATCAAACTGCTAAGGCAGCCTTCGAEST: gi|29783203|gb|CB349232.2|CB349232
genomic: AGAGCAATTGAGTTGGACCCATCAATGTCTAAAGCATTCTTGCGGAAAGGgtaagagcct ... tgtttcacagCACTGCATGTATGAAGCTTGAGGAATATCAAACTGCTAAGGCAGCCTTCGA
EST: AGAGCAATTGAGTTGGACCCATCAATGTCTAAAGCATTCTTGCGGAAAGG CACTGCATGTATGAAGCTTGAGGAATATCAAACTGCTAAGGCAGCCTTCGAEST: gi|110694395|gb|EE071465.1|EE071465
genomic: AGAGCAATTGAGTTGGACCCATCAATGTCTAAAGCATTCTTGCGGAAAGGgtaagagcct ... tgtttcacagCACTGCATGTATGAAGCTTGAGGAATATCAAACTGCTAAGGCAGCCTTCGA
EST: AGAGCAATTGAGTTGGACCCATCAATGTCTAAAGCATTCTTGCGGAAAGG CACTGCATGTATGAAGCTTGAGGAATATCAAACTGCTAAGGCAGCCTTCGAEST: gi|161712354|gb|FC061928.1|FC061928
genomic: AGAGCAATTGAGTTGGACCCATCAATGTCTAAAGCATTCTTGCGGAAAGGgtaagagcct ... tgtttcacagCACTGCATGTATGAAGCTTGAGGAATATCAAACTGCTAAGGCAGCCTTCGA
EST: AGAGCAATTGAGTTGGACCCATCAATGTCTAAAGCATTCTTGCGGAAAGG CACTGCATGTATGAAGCTTGAGGAATATCAAACTGCTAAGGCAGCCTTCGAEST: gi|110686508|gb|EE064228.1|EE064228
genomic: AGAGCAATTGAGTTGGACCCATCAATGTCTAAAGCATTCTTGCGGAAAGGgtaagagcct ... tgtttcacagCACTGCATGTATGAAGCTTGAGGAATATCAAACTGCTAAGGCAGCCTTCGA
EST: AGAGCAATTGAGTTGGACCCATCAATGTCTAAAGCATTCTTGCGGAAAGG CACTGCATGTATGAAGCTTGAGGAATATCAAACTGCTAAGGCAGCCTTCGAEST: gi|32271506|gb|CD720665.1|CD720665
genomic: AGAGCAATTGAGTTGGACCCATCAATGTCTAAAGCATTCTTGCGGAAAGGgtaagagcct ... tgtttcacagCACTGCATGTATGAAGCTTGAGGAATATCAAACTGCTAAGGCAGCCTTCGA
EST: GCATTCTTGCGGAAAGG CACTGCATGTATGAAGCTTGAGGAATATCAAACTGCTAAGGCAGCCTTCGAEST: gi|37187277|gb|CF606630.1|CF606630
genomic: GCATTCTTGCGGAAAGGgtaagagcct ... tgtttcacagCACTGCATGTATGAAGCTTGAGGAATATCAAACTGCTAAGGCAGCCTTCGA
EST: AGAGCAATTGAGTTGGACCCATCAATGTCTAAAGCATTCTTGCGGAAAGG CACTGCATGTATGAAGCTTGAGGAATATCAAACTGCTAAGGCAGCCTTCGAEST: gi|46917631|gb|CN546960.1|CN546960
genomic: AGAGCAATTGAGTTGGACCCATCAATGTCTAAAGCATTCTTGCGGAAAGGgtaagagcct ... tgtttcacagCACTGCATGTATGAAGCTTGAGGAATATCAAACTGCTAAGGCAGCCTTCGA
EST: AGAGCAATTGAGTTGGACCCATCAATGTCTAAAGCATTCTTGCGGAAAGG CACTGCATGTATGAAGCTTGAGGAATATCAAACTGCTAAGGCAGCCTTCGAEST: gi|294964470|gb|GW838273.1|GW838273
genomic: AGAGCAATTGAGTTGGACCCATCAATGTCTAAAGCATTCTTGCGGAAAGGgtaagagcct ... tgtttcacagCACTGCATGTATGAAGCTTGAGGAATATCAAACTGCTAAGGCAGCCTTCGA
EST: AGAGCAATTGAGTTGGACCCATCAATGTCTAAAGCATTCTTGCGGAAAGG CACTGCATGTATGAAGCTTGAGGAATATCAAACTGCTAAGGCAGCCTTCGAEST: gi|110729024|gb|EE105164.1|EE105164
genomic: AGAGCAATTGAGTTGGACCCATCAATGTCTAAAGCATTCTTGCGGAAAGGgtaagagcct ... tgtttcacagCACTGCATGTATGAAGCTTGAGGAATATCAAACTGCTAAGGCAGCCTTCGA
EST: AGAGCAATTGAGTTGGACCCATCAATGTCTAAAGCATTCTTGCGGAAAGG CACTGCATGTATGAAGCTTGAGGAATATCAAACTGCTAAGGCAGCCTTCTAEST: gi|28969441|gb|CB348474.1|CB348474
genomic: AGAGCAATTGAGTTGGACCCATCAATGTCTAAAGCATTCTTGCGGAAAGGgtaagagcct ... tgtttcacagCACTGCATGTATGAAGCTTGAGGAATATCAAACTGCTAAGGCAGCCTTCGA
EST: AGAGCAATTGAGTTGGACCCATCAATGTCTAAAGCATTCTTGCGGAAAGG TACTGCATGTATGAAGCTTGAGGAATATCAAACTGCTAAGGCAGCCTTCGAEST: gi|71863962|gb|DT013017.1|DT013017
genomic: AGAGCAATTGAGTTGGACCCATCAATGTCTAAAGCATTCTTGCGGAAAGGgtaagagcct ... tgtttcacagCACTGCATGTATGAAGCTTGAGGAATATCAAACTGCTAAGGCAGCCTTCGA
EST: AGAGCAATTGAGTTGGACCCATCAATGTCTAAAGCATTCTTGCGGAAAGG CACTGCATGTATGAAGCTTGAGGAATATCAAACTGCTAAGGCAGCCTTCGAEST: gi|71859797|gb|DT008852.1|DT008852
genomic: AGAGCAATTGAGTTGGACCCATCAATGTCTAAAGCATTCTTGCGGAAAGGgtaagagcct ... tgtttcacagCACTGCATGTATGAAGCTTGAGGAATATCAAACTGCTAAGGCAGCCTTCGA
EST: AGAGCAATTGAGTTGGACCCATCAATGTCTAAAGCATTCTTGCGGAAAGG CACTGCATGTATGAAGCTTGAGGAATATCAAACTGCTAAGGCAGCCTTCGAEST: gi|161707617|gb|FC057397.1|FC057397
genomic: AGAGCAATTGAGTTGGACCCATCAATGTCTAAAGCATTCTTGCGGAAAGGgtaagagcct ... tgtttcacagCACTGCATGTATGAAGCTTGAGGAATATCAAACTGCTAAGGCAGCCTTCGA
EST: AGAGCAATTGAGTTGGACCCATCAATGTCTAAAGCATTCTTGCGGAAAGG CACTGCATGTATEST: gi|110687406|gb|EE064790.1|EE064790
genomic: AGAGCAATTGAGTTGGACCCATCAATGTCTAAAGCATTCTTGCGGAAAGGgtaagagcct ... tgtttcacagCACTGCATGTAT
EST: AGAGCAATTGAGTTGGACCCATCAATGTCTAAAGCATTCTTGCGGAAAGG CACTGCATGTATGAAGCTTGAGGAATATCAAACTGCTAAGGCAGCCTTCGAEST: gi|110693950|gb|EE070628.1|EE070628
genomic: AGAGCAATTGAGTTGGACCCATCAATGTCTAAAGCATTCTTGCGGAAAGGgtaagagcct ... tgtttcacagCACTGCATGTATGAAGCTTGAGGAATATCAAACTGCTAAGGCAGCCTTCGA
EST: AGAGCAATTGAGTTGGACCCATCAATGTCTAAAGCATTCTTGCGGAAAGG CACTGCATGTATGAAGCTTGAGGAATATCAAACTGCTAAGGCAGCCTTCGAEST: gi|110711614|gb|EE088295.1|EE088295
genomic: AGAGCAATTGAGTTGGACCCATCAATGTCTAAAGCATTCTTGCGGAAAGGgtaagagcct ... tgtttcacagCACTGCATGTATGAAGCTTGAGGAATATCAAACTGCTAAGGCAGCCTTCGA
EST: AGAGCAATTGAGTTGGACCCATCAATGTCTAAAGCATTCTTGCGGAAAGG CACTGCATGTATGAAGCTTGAGGAATATCAAACTGCTAAGGCAGCCTTCGAEST: gi|161711760|gb|FC058309.1|FC058309
genomic: AGAGCAATTGAGTTGGACCCATCAATGTCTAAAGCATTCTTGCGGAAAGGgtaagagcct ... tgtttcacagCACTGCATGTATGAAGCTTGAGGAATATCAAACTGCTAAGGCAGCCTTCGA
EST: AGAGCAATTGAGTTGGACCCATCAATGTCTAAAGCATTCTTGCGGAAAGG CACTGCATGTATGAAGCTTGAGGAATATCAAACTGCTAAGGCAGCCTTCGAEST: gi|32249238|gb|CD715057.1|CD715057
genomic: AGAGCAATTGAGTTGGACCCATCAATGTCTAAAGCATTCTTGCGGAAAGGgtaagagcct ... tgtttcacagCACTGCATGTATGAAGCTTGAGGAATATCAAACTGCTAAGGCAGCCTTCGA
EST: GCATTCTTGCGGAAAGG CACTGCATGTATGAAGCTTGAGGAATATCAAACTGCTAAGGCAGCCTTCGAEST: gi|110732977|gb|EE108734.1|EE108734
genomic: GCATTCTTGCGGAAAGGgtaagagcct ... tgtttcacagCACTGCATGTATGAAGCTTGAGGAATATCAAACTGCTAAGGCAGCCTTCGA
EST: AGAGCAATTGAGTTGGACCCATCAATGTCTAAAGCATTCTTGCGGAAAGG CACTGCATGTATGAAGCTTGAGGAATATCAAACTGCTAAGGCAGCCTTCGAEST: gi|110723197|gb|EE100235.1|EE100235
genomic: AGAGCAATTGAGTTGGACCCATCAATGTCTAAAGCATTCTTGCGGAAAGGgtaagagcct ... tgtttcacagCACTGCATGTATGAAGCTTGAGGAATATCAAACTGCTAAGGCAGCCTTCGA
EST: AGAGCAATTGAGTTGGACCCATCAATGTCTAAAGCATTCTTGCGGAAAGG CACTGCATGTATGAAGCTTGAGGAATATCAAACTGCTAAGGCAGCCTTCGAEST: gi|161718657|gb|FC067946.1|FC067946
genomic: AGAGCAATTGAGTTGGACCCATCAATGTCTAAAGCATTCTTGCGGAAAGGgtaagagcct ... tgtttcacagCACTGCATGTATGAAGCTTGAGGAATATCAAACTGCTAAGGCAGCCTTCGA
EST: AGAGCAATTGAGTTGGACCCATCAATGTCTAAAGCATTCTTGCGGAAAGG CACTGCATGTATGAAGCTTGAGGAATATCAAACTGCTAAGGCAGCCTTCGAEST: gi|71857115|gb|DT006170.1|DT006170
genomic: AGAGCAATTGAGTTGGACCCATCAATGTCTAAAGCATTCTTGCGGAAAGGgtaagagcct ... tgtttcacagCACTGCATGTATGAAGCTTGAGGAATATCAAACTGCTAAGGCAGCCTTCGA
EST: AGAGCAATTGAGTTGGACCCATCAATGTCTAAAGCATTCTTGCGGAAAGG CACTGCATGTATGAAGCTTGAGGAATATCAAACTGCTAAGGCAGCCTTCGAEST: gi|71873209|gb|DT022264.1|DT022264
genomic: AGAGCAATTGAGTTGGACCCATCAATGTCTAAAGCATTCTTGCGGAAAGGgtaagagcct ... tgtttcacagCACTGCATGTATGAAGCTTGAGGAATATCAAACTGCTAAGGCAGCCTTCGA
EST: AGAGCAATTGAGTTGGACCCATCAATGTCTAAAGCATTCTTGCGGAAAGG CACTGCATGTATGAAGCTTGAGGAATATCAAACTGCTAAGGCAGCCTTCGA
genomic: AGAGCAATTGAGTTGGACCCATCAATGTCTAAAGCATTCTTGCGGAAAGGgtaagagcct ... tgtttcacagCACTGCATGTATGAAGCTTGAGGAATATCAAACTGCTAAGGCAGCCTTCGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGCTGTTGCTGATGCAAACAGAGCAATTGAGTTGGACCCATCAATGTCTAAAGCATTCTTGCGGAAAGGgtaagagccttggactttgcaaattgatatgtataattattttgtcatcagtgatggtgccaattcattcagcagcatttgacatatgctttcagtgtaa
- - - - - - - - - - AGAGCA
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