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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGCTCTGTTTGCGATACTCTCCGGCTACCATTACTAGAAGATTGGACGCGGTTGAAATTCCCAAAAACCCGAGAAGCATCGTGgtaacgtgtttgtgtttgcgcttgcagaatatttttttcctttgaaaaaagaaagtaatgaaagctgggattcttgcaacacgaagaattcaagctttct...

Basic information

species Vitis vinifera
transcript Vv16s0050g01450.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351046546|gb|FQ453162.1|FQ453162
EST:     CTAGAAGATTGGACTCGGTTGAAATTCCCAAAAACCCGAGAAGCATCGTG                         GTCTGTGGTGCAAAAGGACCTCGTCCGAGATATCCTCGGGTATGGAAAACC
genomic: CTAGAAGATTGGACGCGGTTGAAATTCCCAAAAACCCGAGAAGCATCGTGgtaacgtgtt ... tgatgtgtagGTCTGTGGTGCAAAAGGACCTCGTCCGAGATATCCTCGGGTATGGAAAACC
EST: gi|351054436|gb|FQ450519.1|FQ450519
EST:     CTAGAAGATTGGACGCGGTTGAAATTCCCAAAAACCCGAGAAGCATCGTG                         GTCTGTGGTGCAAAAGGACCTCGTCCGAGATATCCTCGGGTATGGAAAACC
genomic: CTAGAAGATTGGACGCGGTTGAAATTCCCAAAAACCCGAGAAGCATCGTGgtaacgtgtt ... tgatgtgtagGTCTGTGGTGCAAAAGGACCTCGTCCGAGATATCCTCGGGTATGGAAAACC
EST: gi|351033744|gb|FQ462274.1|FQ462274
EST:     CTAGAAGATTGGACTCGGTTGAAATTCCCAAAAACCCGAGAAGCATCGTG                         GTCTGTGGTGCAAAAGGACCTCGTCCGAGATATCCTCGGGTATGGAAAACC
genomic: CTAGAAGATTGGACGCGGTTGAAATTCCCAAAAACCCGAGAAGCATCGTGgtaacgtgtt ... tgatgtgtagGTCTGTGGTGCAAAAGGACCTCGTCCGAGATATCCTCGGGTATGGAAAACC
EST: gi|349822100|gb|FQ408429.1|FQ408429
EST:     CTAGAAGATTGGACGCGGTTGAAATTCCCAAAAACCCGAGAAGCATCGTG                         GTCTGTGGTGCAAAAGGACCTCGTCCGAGATATCCTCGGGTATGGAAAACC
genomic: CTAGAAGATTGGACGCGGTTGAAATTCCCAAAAACCCGAGAAGCATCGTGgtaacgtgtt ... tgatgtgtagGTCTGTGGTGCAAAAGGACCTCGTCCGAGATATCCTCGGGTATGGAAAACC
EST: gi|349814396|gb|FQ398836.1|FQ398836
EST:     CTAGAAGATTGGACGCGGTTGAAATTCCCAAAAACCCGAGAAGCATCGTG                         GTCTGTGGTGCAAAAGGACCTCGTCCGAGATATCCTCGGGTATGGAAAACC
genomic: CTAGAAGATTGGACGCGGTTGAAATTCCCAAAAACCCGAGAAGCATCGTGgtaacgtgtt ... tgatgtgtagGTCTGTGGTGCAAAAGGACCTCGTCCGAGATATCCTCGGGTATGGAAAACC
EST: gi|349815708|gb|FQ400864.1|FQ400864
EST:     CTAGAAGATTGGACTCGGTTGAAATTCCCAAAAACCCGAGAAGCATCGTG                         GTCTGTGGTGCAAAAGGACCTCGTCCGAGATATCCTCGGGTATGGAAAACC
genomic: CTAGAAGATTGGACGCGGTTGAAATTCCCAAAAACCCGAGAAGCATCGTGgtaacgtgtt ... tgatgtgtagGTCTGTGGTGCAAAAGGACCTCGTCCGAGATATCCTCGGGTATGGAAAACC
EST: gi|351055367|gb|FQ441965.1|FQ441965
EST:     CTAGAAGATTGGACTCGGTTGAAATTCCCAAAAACCCGAGAAGCATCGTG                         GTCTGTGGTGCAAAAGGACCTCGTCCGAGATATCCTCGGGTATGGAAAACC
genomic: CTAGAAGATTGGACGCGGTTGAAATTCCCAAAAACCCGAGAAGCATCGTGgtaacgtgtt ... tgatgtgtagGTCTGTGGTGCAAAAGGACCTCGTCCGAGATATCCTCGGGTATGGAAAACC
EST: gi|22014552|gb|BQ799586.1|BQ799586
EST:     AAAA-CCGAGAAGCATCGTG                         GTCTGT-GTGC-AAAGGACCTCGTCCGAGATATCCTC-GGTATGGAAAACC
genomic: AAAACCCGAGAAGCATCGTGgtaacgtgtt ... tgatgtgtagGTCTGTGGTGCAAAAGGACCTCGTCCGAGATATCCTCGGGTATGGAAAACC
EST: gi|349827078|gb|FQ421351.1|FQ421351
EST:     CTAGAAGATTGGACGCGGTTGAAATTCCCAAAAACCCGAGAAGCATCGTG                         GTCTGTGGTGCAAAAGGACCTCGTCCGAGATATCCTCGGGTATGGAAAACC
genomic: CTAGAAGATTGGACGCGGTTGAAATTCCCAAAAACCCGAGAAGCATCGTGgtaacgtgtt ... tgatgtgtagGTCTGTGGTGCAAAAGGACCTCGTCCGAGATATCCTCGGGTATGGAAAACC
EST: gi|294965603|gb|GW837202.1|GW837202
EST:     CTAGAAGATTGGACTCGGTTGAAATTCCCAAAAACCCGAGAAGCATCGTG                         GTCTGTGGTGCAAAAGGACCTCGTCCGAGATATCCTCGGGTATGGAAAACC
genomic: CTAGAAGATTGGACGCGGTTGAAATTCCCAAAAACCCGAGAAGCATCGTGgtaacgtgtt ... tgatgtgtagGTCTGTGGTGCAAAAGGACCTCGTCCGAGATATCCTCGGGTATGGAAAACC
EST: gi|351052433|gb|FQ452466.1|FQ452466
EST:     CTAGAAGATTGGACTCGGTTGAAATTCCCAAAAACCCGAGAAGCATCGTG                         GTCTGTGGTGCAAAAGGACCTCGTCCGAGATATCCTCGGGTATGGAAAACC
genomic: CTAGAAGATTGGACGCGGTTGAAATTCCCAAAAACCCGAGAAGCATCGTGgtaacgtgtt ... tgatgtgtagGTCTGTGGTGCAAAAGGACCTCGTCCGAGATATCCTCGGGTATGGAAAACC
EST: gi|352781628|gb|FQ468926.1|FQ468926
EST:     CTAGAAGATTGGACGCGGTTGAAATTCCCAAAAACCCGAGAAGCATCGTG                         GTCTGTGGTGCAAAAGGACCTCGTCCGAGATATCCTCGGGTATGGAAAACC
genomic: CTAGAAGATTGGACGCGGTTGAAATTCCCAAAAACCCGAGAAGCATCGTGgtaacgtgtt ... tgatgtgtagGTCTGTGGTGCAAAAGGACCTCGTCCGAGATATCCTCGGGTATGGAAAACC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GATGCTCTGTTTGCGATACTCTCCGGCTACCATTACTAGAAGATTGGACGCGGTTGAAATTCCCAAAAACCCGAGAAGCATCGTGgtaacgtgtttgtgtttgcgcttgcagaatatttttttcctttgaaaaaagaaagtaatgaaagctgggattcttgcaacacgaagaattcaagctttct

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcagaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaagaat