1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
ATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAGgtttgtctcactcctctacttgcgtttacttgatttgttttgttgttttttcttgtttgggtaccgagaatctgtagaaaagaggattggaaattctggg...
species | Vitis vinifera |
transcript | Vv16s0050g01160.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GAGATCTCCAAGTACCTCTTCCAAG AGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAAEST: gi|51051467|gb|CO819071.1|CO819071
genomic: GAGATCTCCAAGTACCTCTTCCAAGgtttgtctca ... atgtgtgcagAGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAA
EST: A-TAT-CCCGAG-AGAATCGGAGAGAGAT-TCCAAGTACCTC-TCCAAG AGGGAG-TNGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAAEST: gi|110377465|gb|EC942530.1|EC942530
genomic: ATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAGgtttgtctca ... atgtgtgcagAGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAA
EST: ATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAG AGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAAEST: gi|110715571|gb|EE093772.1|EE093772
genomic: ATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAGgtttgtctca ... atgtgtgcagAGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAA
EST: ATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAG AGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAAEST: gi|110700496|gb|EE078604.1|EE078604
genomic: ATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAGgtttgtctca ... atgtgtgcagAGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAA
EST: ATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAG AGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAAEST: gi|71868077|gb|DT017132.1|DT017132
genomic: ATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAGgtttgtctca ... atgtgtgcagAGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAA
EST: ATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAG AGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAAEST: gi|110702044|gb|EE080304.1|EE080304
genomic: ATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAGgtttgtctca ... atgtgtgcagAGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAA
EST: ATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAG AGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAAEST: gi|110416841|gb|EC982847.1|EC982847
genomic: ATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAGgtttgtctca ... atgtgtgcagAGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAA
EST: GAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAG AGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAAEST: gi|110703760|gb|EE080890.1|EE080890
genomic: GAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAGgtttgtctca ... atgtgtgcagAGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAA
EST: ATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAG AGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAAEST: gi|110398785|gb|EC965259.1|EC965259
genomic: ATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAGgtttgtctca ... atgtgtgcagAGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAA
EST: ATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAG AGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAAEST: gi|34364255|gb|CF405840.1|CF405840
genomic: ATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAGgtttgtctca ... atgtgtgcagAGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAA
EST: GAGAGATCTCCAA-TACCTCTTCCAAG AGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAAEST: gi|110360451|gb|EC923562.1|EC923562
genomic: GAGAGATCTCCAAGTACCTCTTCCAAGgtttgtctca ... atgtgtgcagAGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAA
EST: ATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAG AGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAAEST: gi|110363287|gb|EC926864.1|EC926864
genomic: ATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAGgtttgtctca ... atgtgtgcagAGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAA
EST: GAGATCTCCAAGTACCTCTTCCAAG AGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAAEST: gi|110692204|gb|EE071178.1|EE071178
genomic: GAGATCTCCAAGTACCTCTTCCAAGgtttgtctca ... atgtgtgcagAGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAA
EST: ATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAG AGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAAEST: gi|110723368|gb|EE100598.1|EE100598
genomic: ATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAGgtttgtctca ... atgtgtgcagAGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAA
EST: ATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAG AGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAAEST: gi|87584250|gb|DY473484.1|DY473484
genomic: ATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAGgtttgtctca ... atgtgtgcagAGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAA
EST: ATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAG AGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAAEST: gi|30320459|gb|CD003721.1|CD003721
genomic: ATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAGgtttgtctca ... atgtgtgcagAGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAA
EST: ATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAG AGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAAEST: gi|29781884|gb|CB346698.2|CB346698
genomic: ATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAGgtttgtctca ... atgtgtgcagAGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAA
EST: ATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAG AGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAAEST: gi|18458561|gb|BM436839.1|BM436839
genomic: ATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAGgtttgtctca ... atgtgtgcagAGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAA
EST: ATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAG AGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAAEST: gi|110722253|gb|EE098322.1|EE098322
genomic: ATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAGgtttgtctca ... atgtgtgcagAGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAA
EST: ATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAG AGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAAEST: gi|32268119|gb|CD717278.1|CD717278
genomic: ATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAGgtttgtctca ... atgtgtgcagAGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAA
EST: ATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAG AGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAAEST: gi|110401412|gb|EC968022.1|EC968022
genomic: ATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAGgtttgtctca ... atgtgtgcagAGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAA
EST: ATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAG AGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAAEST: gi|37189321|gb|CF608670.1|CF608670
genomic: ATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAGgtttgtctca ... atgtgtgcagAGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAA
EST: ATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAG AGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAAEST: gi|110692508|gb|EE071834.1|EE071834
genomic: ATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAGgtttgtctca ... atgtgtgcagAGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAA
EST: ATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAG AGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAA
genomic: ATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAGgtttgtctca ... atgtgtgcagAGGGAGTTTGCTATGCAAAGAAGGACTACAATCTTGCAAAACACCCCGAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTATCCCCGAGAAGAATCGGAGAGAGATCTCCAAGTACCTCTTCCAAGgtttgtctcactcctctacttgcgtttacttgatttgttttgttgttttttcttgtttgggtaccgagaatctgtagaaaagaggattggaaattctggg
- - - - - - - - - - - - GAGATC
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttggaaa