1 5' 3' | 2 5' 3' |
TTAATGGAGCCTTACGCAAAGATTGACCATGTTAGTGGGATCGCAGTTCTTGCTGTTGTCATACTTGTCCTGTCAAATGTGGCTTCTAATGTACCAACCGgtatgttgatgagatcagcagcttacctttaaaagtccattcaatttgattgaaaacttgggaaaggaaaaaaacttgttgataagtctttcatattaca...
species | Vitis vinifera |
transcript | Vv16s0050g00780.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TGCTGTTGTCATACTTGTCCTGTCAAATGTGGCTTCTAATGTACCAACCG TTCTCTTGCTTGGAGCACGGGTGGCAGCATCAGCAGCTCAAATTTCCGCAGEST: gi|110360567|gb|EC923780.1|EC923780
genomic: TGCTGTTGTCATACTTGTCCTGTCAAATGTGGCTTCTAATGTACCAACCGgtatgttgat ... atgatgatagTTCTCTTGCTTGGAGCACGGGTGGCAGCATCAGCAGCTCAAATTTCCGCAG
EST: TGCTGTTGTCATACTTGTCCTGTCAAATGTGGCTTCTAATGTACCAACTG TTCTCTTGCTTGGAGCACGGGTGGCAGCATCAGCAGCTCAAATTTCCGCAG
genomic: TGCTGTTGTCATACTTGTCCTGTCAAATGTGGCTTCTAATGTACCAACCGgtatgttgat ... atgatgatagTTCTCTTGCTTGGAGCACGGGTGGCAGCATCAGCAGCTCAAATTTCCGCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTAATGGAGCCTTACGCAAAGATTGACCATGTTAGTGGGATCGCAGTTCTTGCTGTTGTCATACTTGTCCTGTCAAATGTGGCTTCTAATGTACCAACCGgtatgttgatgagatcagcagcttacctttaaaagtccattcaatttgattgaaaacttgggaaaggaaaaaaacttgttgataagtctttcatattaca
- - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - attgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gggaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaa