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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGTACATGGGAAAATCCAATCTATGAAACGGTGAAGTTAATCAAGGAGAAGAAAACAGGGATAATCCATGAGAAAATTTACCGTTTCATTGTTTCAACTgtaagaattatcccaacttctcactctgttcttcattttttgattggatttctgttgagctgtttccaaattttatcctctggcag

Basic information

species Vitis vinifera
transcript Vv16s0050g00100.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0050g00100.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA20G29760.1 (Glycine max), 5'ss of exon 2
CTGTACATGGGAAAATCCAATCTATGAAACGGTGAAGTTAATCAAGGAGAAGAAAACAGGGATAATCCATGAGAAAATTTACCGTTTCATTGTTTCAACTgtaagaattatcccaacttctcactctgttcttcattttttgattggatttctgttgagctgtttccaaattttatcctctggcag
|||  ||||||| |||||| | | |||| | || ||  |  | | |||    ||| |||| | ||| ||||||||||| |||| ||||||||||||||||||||| | ||     | || |||| |||| ||| | |   | |  |||| |  |||     ||       || |   |||| ||||
CTGCTCATGGGAGAATCCAGTTTTTGAATCAGTTAAACTTGTTAGGGATTCAAAATCAGGAAAAATTCATGAGAAAATCTACCATTTCATTGTTTCAACTgtaagcagtagttgtaatt-tcacactgtcctttactcaatta--ggatgttggtttcaaagtcaaatctttgtgggctcttgcag

upper sequence: Vv16s0050g00100.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA10G38060.1 (Glycine max), 5'ss of exon 1
CTGTACATGGGAAAATCCAATCTATGAAACGGTGAAGTTAATCAAGGAGAAGAAAACAGGGATAATCCATGAGAAAATTTACCGTTTCATTGTTTCAACTgtaagaattatcccaacttctcactctgttcttcattttttgattggatttctgttgagctgtttccaaattttatcctctggcag
|||  |||||||||||||| | | |||| | || ||  |  | | |||    ||| |||| | | | ||||||||||| |||| ||| ||||||||||||||||| | ||     | || |||| |||| ||| | |   | |  |||| |  |||     || |     | |    |||| ||||
CTGCTCATGGGAAAATCCAGTGTTTGAACCAGTTAAACTTGTTAGGGATTCAAAATCAGGAAAAGTTCATGAGAAAATCTACCATTTTATTGTTTCAACTgtaagcagtagttgtaatt-tcacactgtcctttactcaatta--ggatgttggtttcaaagtctaattttgtggggctcttgcag

upper sequence: Vv16s0050g00100.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA09G25810.1 (Glycine max), 5'ss of exon 1
CTGTACATGGGAAAATCCAATCTATGAAACGGTGAAGTTAATCAAGGAGAAGAAAACAGGGATAATCCATGAGAAAATTTACCGTTTCATTGTTTCAACTgtaagaattat-cccaacttctcactctgttcttcattttttgattggatttctgttgagctgtttccaaattttatcctctggcag
||||  |||||| |||||||| | |||| | || ||  |    ||||| |  ||| |||| | | | || |||||||| |||| ||| ||||||||||||||||||| ||     || | |  ||| | || | | | | | |  |   || |||   ||     ||     | ||   ||| ||||
CTGTTTATGGGAGAATCCAATTTTTGAATCAGTTAAACTCGCTAAGGACACAAAATCAGGAAAACTTCAGGAGAAAATCTACCATTTTATTGTTTCAACTgtaagaagtagatttaattgcatactatcttttacctgtctaggatatgttgctggaaagtctaatct---ctataggttcttgcag