1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
AGGTTCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAGgtaatattgaatttatcataaatgatcgttttcttgttttaaattttccttttattgcccaccttctgtagctttgatgaatatgaataatagtaacttccttttttcag
species | Vitis vinifera |
transcript | Vv16s0050g00080.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAG ACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAGEST: gi|349827462|gb|FQ422330.1|FQ422330
genomic: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAGgtaatattga ... cttttttcagACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
EST: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGT---C--A- ACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAGEST: gi|110701591|gb|EE079339.1|EE079339
genomic: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAGgtaatattga ... cttttttcagACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
EST: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAG ACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAGEST: gi|351020365|gb|FQ445972.1|FQ445972
genomic: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAGgtaatattga ... cttttttcagACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
EST: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAG ACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAGEST: gi|110692641|gb|EE072119.1|EE072119
genomic: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAGgtaatattga ... cttttttcagACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
EST: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAG ACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAGEST: gi|110374943|gb|EC939889.1|EC939889
genomic: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAGgtaatattga ... cttttttcagACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
EST: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAG ACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAGEST: gi|110394019|gb|EC958374.1|EC958374
genomic: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAGgtaatattga ... cttttttcagACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
EST: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAG ACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAGEST: gi|56409507|gb|CX017759.1|CX017759
genomic: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAGgtaatattga ... cttttttcagACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
EST: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAG ACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAGEST: gi|29783949|gb|CB344101.2|CB344101
genomic: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAGgtaatattga ... cttttttcagACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
EST: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAG ACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAGEST: gi|37190279|gb|CF609628.1|CF609628
genomic: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAGgtaatattga ... cttttttcagACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
EST: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAG ACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAGEST: gi|30322525|gb|CD005787.1|CD005787
genomic: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAGgtaatattga ... cttttttcagACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
EST: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAG ACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAGEST: gi|37186543|gb|CF605896.1|CF605896
genomic: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAGgtaatattga ... cttttttcagACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
EST: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAG ACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAGEST: gi|77579827|gb|DV218793.1|DV218793
genomic: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAGgtaatattga ... cttttttcagACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
EST: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAG ACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAGEST: gi|33406229|gb|CF211856.1|CF211856
genomic: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAGgtaatattga ... cttttttcagACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
EST: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAG ACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAGEST: gi|27755276|gb|CB036031.1|CB036031
genomic: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAGgtaatattga ... cttttttcagACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
EST: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACATAG ACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAGEST: gi|110366193|gb|EC929937.1|EC929937
genomic: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAGgtaatattga ... cttttttcagACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
EST: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAG ACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAGEST: gi|33406137|gb|CF211764.1|CF211764
genomic: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAGgtaatattga ... cttttttcagACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
EST: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAG ACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAGEST: gi|110380609|gb|EC945888.1|EC945888
genomic: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAGgtaatattga ... cttttttcagACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
EST: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAG ACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAGEST: gi|28965124|gb|CB344157.1|CB344157
genomic: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAGgtaatattga ... cttttttcagACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
EST: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAG ACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAGEST: gi|56409736|gb|CX017988.1|CX017988
genomic: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAGgtaatattga ... cttttttcagACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
EST: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAG ACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAGEST: gi|110416964|gb|EC982982.1|EC982982
genomic: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAGgtaatattga ... cttttttcagACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
EST: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAG ACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAGEST: gi|71872560|gb|DT021615.1|DT021615
genomic: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAGgtaatattga ... cttttttcagACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
EST: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAG ACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAGEST: gi|110693803|gb|EE070355.1|EE070355
genomic: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAGgtaatattga ... cttttttcagACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
EST: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAG ACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAGEST: gi|351057040|gb|FQ448557.1|FQ448557
genomic: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAGgtaatattga ... cttttttcagACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
EST: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAG ACACTGTGCTTGCACGAGTTGCAACAGAGAAGGGGCTATCACTAATCAGAGEST: gi|352795758|gb|FQ480346.1|FQ480346
genomic: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAGgtaatattga ... cttttttcagACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
EST: TCCAGAACCCATTGAAGAGAAGGGCTCTGAGGGTGGTTCTGTCAACAGAG ACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAGEST: gi|351033526|gb|FQ446992.1|FQ446992
genomic: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAGgtaatattga ... cttttttcagACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
EST: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAG ACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGATEST: gi|110708527|gb|EE086168.1|EE086168
genomic: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAGgtaatattga ... cttttttcagACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
EST: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAG ACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAGEST: gi|110422273|gb|EC988591.1|EC988591
genomic: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAGgtaatattga ... cttttttcagACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
EST: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAG ACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAGEST: gi|351019268|gb|FQ429428.1|FQ429428
genomic: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAGgtaatattga ... cttttttcagACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
EST: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAG ACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAGEST: gi|110418793|gb|EC984969.1|EC984969
genomic: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAGgtaatattga ... cttttttcagACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
EST: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAG ACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAGEST: gi|27581608|gb|CB004303.1|CB004303
genomic: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAGgtaatattga ... cttttttcagACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
EST: GAAAGGCTCTGAGGGTGGTTCTGTCAACAGAG ACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAGEST: gi|351023530|gb|FQ432913.1|FQ432913
genomic: GAAAGGCTCTGAGGGTGGTTCTGTCAACAGAGgtaatattga ... cttttttcagACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
EST: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAG ACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGATEST: gi|27580860|gb|CB003555.1|CB003555
genomic: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAGgtaatattga ... cttttttcagACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
EST: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAG ACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAGEST: gi|110412405|gb|EC978153.1|EC978153
genomic: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAGgtaatattga ... cttttttcagACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
EST: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAG ACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAGEST: gi|71858022|gb|DT007077.1|DT007077
genomic: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAGgtaatattga ... cttttttcagACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
EST: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAG ACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAGEST: gi|351020250|gb|FQ445857.1|FQ445857
genomic: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAGgtaatattga ... cttttttcagACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
EST: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAG ACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
genomic: TCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAGgtaatattga ... cttttttcagACACTGTGCTTGCACGAGTTGCAACAGAGAAGAGGCTATCACTAATCAGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGTTCCAGAACCCATTGAAGAGAAAGGCTCTGAGGGTGGTTCTGTCAACAGAGgtaatattgaatttatcataaatgatcgttttcttgttttaaattttccttttattgcccaccttctgtagctttgatgaatatgaataatagtaacttccttttttcag
- - - - - - - TTGAAG
- - - - - - - - TGAAGA
- - - - - - - - - AAGAGA