Sequence
atgc intronic sequence ATGC exonic sequenceCATGTCGTGTTGGTTTACTTTTTGGTGGTTTTACTGGATCCTATCATGCCCTCCGATGTTTGTTGAGAAAGTTGAGAAAGAAAGAAACTCCTCTGAATGCgtaagtttccaatccttaatatccctttctagtacatgatttgtatttttttaaaacttcattttgtatgttttggaatgatttgaagctgttgatgcatgatagagcctattccatatttatgactttgttaaaggggatgatggagcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv16s0039g02700.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA10G33510.1 (Glycine max), 5'ss of exon 2
CATGTCGTGTTGGTTTACTTTTTGGTGGTTTTACTGGATCCTATCATGCCCTCCGATGTTTGTTGAGAAAGTTGAGAAAGAAAGAAACTCCTCTGAATGCgtaagtttccaatccttaatatccctttctagtacatgatttgtatttttttaaaacttcattttgtatgttttggaatg-atttgaagctgttgatgcatgatagagcctattccatatttatgactttgttaaaggggatgatggagcag
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CATGCCGCATTGGTTTACTTTTTGGTGGTTTCACTGGATCTTATCATGCTCTTAGATGCTTGTTGCGAAAATTGAGAAAGAAAGAGACACCAGCTAATGCgtaagttgcagctc----aaactgctttctggatttatttttgtagcttctcagttaattttttttaagcttttgttttggatattgttttgttgtt-tgtgtttgcacgcgttgcttatttatgactttgtttaaggggatgatggcgcag
upper sequence: Vv16s0039g02700.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA10G33510.1 (Glycine max), 5'ss of exon 2
CATGTCGTGTTGGTTTACTTTTTGGTGGTTTTACTGGATCCTATCATGCCCTCCGATGTTTGTTGAGAAAGTTGAGAAAGAAAGAAACTCCTCTGAATGCgtaagtttccaatccttaatatccctttctagtacatgatttgtatttttttaaaacttcattttgtatgttttggaatg-atttgaagctgttgatgcatgatagagcctattccatatttatgactttgttaaaggggatgatggagcag
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CATGCCGCATTGGTTTACTTTTTGGTGGTTTCACTGGATCTTATCATGCTCTTAGATGCTTGTTGCGAAAATTGAGAAAGAAAGAGACACCAGCTAATGCgtaagttgcagctc----aaactgctttctggatttatttttgtagcttctcagttaattttttttaagcttttgttttggatattgttttgttgtt-tgtgtttgcacgcgttgcttatttatgactttgtttaaggggatgatggcgcag
upper sequence: Vv16s0039g02700.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA20G34070.1 (Glycine max), 5'ss of exon 2
CATGTCGTGTTGGTTTACTTTTTGGTGGTTTTACTGGATCCTATCATGCCCTCCGATGTTTGTTGAGAAAGTTGAGAAAGAAAGAAACTCCTCTGAATGCgtaagtt-----tccaa-----tccttaatatccctttctagtacatgatttg--tatttttttaaaacttcattttgtatgttttggaatgatttgaagctgtt----gatgcatgatagagcctattccatatttatgactttgttaaaggggatgatggagcag
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CATGCCGCATTGGTCTTCTTTTTGGTGGTTTCACTGGATCTTATCATGCTCTTAGATGCTTGTTGCGGAAATTGAGAAAGAAAGAGACACCGGCTAATGCgtaagttgcagctcaaactgttttcttgatttattcttgtagcttctcagttaactatttttttcaagctt----ttgt-tatttttaaatagttggatattgttttgctgtttgtgtttgcacgtgttgcttatttatgactttgtttaaggggatgatggtgcag
upper sequence: Vv16s0039g02700.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA20G34070.1 (Glycine max), 5'ss of exon 2
CATGTCGTGTTGGTTTACTTTTTGGTGGTTTTACTGGATCCTATCATGCCCTCCGATGTTTGTTGAGAAAGTTGAGAAAGAAAGAAACTCCTCTGAATGCgtaagtt-----tccaa-----tccttaatatccctttctagtacatgatttg--tatttttttaaaacttcattttgtatgttttggaatgatttgaagctgtt----gatgcatgatagagcctattccatatttatgactttgttaaaggggatgatggagcag
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CATGCCGCATTGGTCTTCTTTTTGGTGGTTTCACTGGATCTTATCATGCTCTTAGATGCTTGTTGCGGAAATTGAGAAAGAAAGAGACACCGGCTAATGCgtaagttgcagctcaaactgttttcttgatttattcttgtagcttctcagttaactatttttttcaagctt----ttgt-tatttttaaatagttggatattgttttgctgtttgtgtttgcacgtgttgcttatttatgactttgtttaaggggatgatggtgcag
upper sequence: Vv16s0039g02700.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT5G51150.1 (Arabidopsis thaliana), 5'ss of exon 2
CATGTCGTGTTGGTTTACTTTTTGGTGGTTTTACTGGATCCTATCATGCCCTCCGATGTTTGTTGAGAAAGTTGAGAAAGAAAGAAACTCCTCTGAATGCgtaagtttccaatccttaatatccctttctagtacatgatttgtatttttttaaaacttcattttgtatgttttggaatgatttgaagctgttgatgcatgatagagcctattccatatttatgactttgttaaaggggatgatggagcag
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CATGTCGTATTGGTCTACTTTTTGGTGGCTTTACTGGCTCGTATCATGCCCTTAGATGCTGTTTGAGGAAGTGGAGAAAGAAAGAGACGCCATTGAATTCgtaagtttat-----tttatttatttgtgttgcctaagatttcgattgttgtatctcttttcttataatgcttctactttttactttgtgcatagtgcttga-aaagtatattccttatt-atgactttgattaaggg-----tggagcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|294965652|gb|GW837251.1|GW837251EST: GAAAGAAACTCCTCTGAATGC GATTTTAGCAGGTTCAGTTGCGGGTTTGTCTATTCTAGCCTTAGATGATTC
genomic: GAAAGAAACTCCTCTGAATGCgtaagtttcc ... gatggagcagAATTTTAGCAGGTTCAGTTGCGGGTTTGTCTATTCTAGCCTTAGATGATTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CATGTCGTGTTGGTTTACTTTTTGGTGGTTTTACTGGATCCTATCATGCCCTCCGATGTTTGTTGAGAAAGTTGAGAAAGAAAGAAACTCCTCTGAATGCgtaagtttccaatccttaatatccctttctagtacatgatttgtatttttttaaaacttcattttgtatgttttggaatgatttgaagctgttgatgcatgatagagcctattccatatttatgactttgttaaaggggatgatggagcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC