1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GCACAAGACAAGGCTACATATTGGGCAGTTGGTGAAAGATACTTCAGCAAAGCTTAAGCAAGCAAGTGAAAATGATCAGCATACTGAAGTTAGCgtaagtgcagatgagtttggagtttctagtggcagccttgcctttgatgtttttgttttagaaatttcatatcattgttcttcagaaaattcctatggtt...
species | Vitis vinifera |
transcript | Vv16s0039g01850.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CAGCAAAGCTTAAGCAAGCAAGTGAAAATGATCAGCATACTGAAGTTAGC GCTAGCAAGAGGATTGCAGATGCTAAGCTTGCAAAAGATTTTCAGGCAGTTEST: gi|37189725|gb|CF609074.1|CF609074
genomic: CAGCAAAGCTTAAGCAAGCAAGTGAAAATGATCAGCATACTGAAGTTAGCgtaagtgcag ... taaactgcagGCTAGCAAGAGGATTGCAGATGCTAAGCTTGCAAAAGATTTTCAGGCAGTT
EST: CAGCAAAGCTTAAGCAAGCAAGTGAAAATGATCAGCATACTGAAGTTAGC GCTAGCAAGAGGATTGCAGATGCTAAGCTTGCAAAAGATTTTCAGGCAGTTEST: gi|71857848|gb|DT006903.1|DT006903
genomic: CAGCAAAGCTTAAGCAAGCAAGTGAAAATGATCAGCATACTGAAGTTAGCgtaagtgcag ... taaactgcagGCTAGCAAGAGGATTGCAGATGCTAAGCTTGCAAAAGATTTTCAGGCAGTT
EST: CAGCAAAGCTTAAGCAAGCAAGTGAAAATGATCAGCATACTGAAGTTAGC GCTAGCAAGAGGATTGCAGATGCTAAGCTTGCAAAAGATTTTCAGGCAGTTEST: gi|110709126|gb|EE084313.1|EE084313
genomic: CAGCAAAGCTTAAGCAAGCAAGTGAAAATGATCAGCATACTGAAGTTAGCgtaagtgcag ... taaactgcagGCTAGCAAGAGGATTGCAGATGCTAAGCTTGCAAAAGATTTTCAGGCAGTT
EST: CAGCAAAGCTTAAGCAAGCAAGTGAAAATGATCAGCATACTGAAGTTAGC GCTAGCAAGAGGATTGCAGATGCTAAGCTTGCAAAAGATTTTCAGGCAGTT
genomic: CAGCAAAGCTTAAGCAAGCAAGTGAAAATGATCAGCATACTGAAGTTAGCgtaagtgcag ... taaactgcagGCTAGCAAGAGGATTGCAGATGCTAAGCTTGCAAAAGATTTTCAGGCAGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCACAAGACAAGGCTACATATTGGGCAGTTGGTGAAAGATACTTCAGCAAAGCTTAAGCAAGCAAGTGAAAATGATCAGCATACTGAAGTTAGCgtaagtgcagatgagtttggagtttctagtggcagccttgcctttgatgtttttgttttagaaatttcatatcattgttcttcagaaaattcctatggtt
- - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agaaaat