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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCTAAGAAGTATGGGGCCAGTTGCCAAGGGATTACTCTCAGTCCCCTCCAAGCTCAAAGGGCTCAGACTCTTGCTGCATCCCAAGGTTTGGCTGACAAGgtgcgagttcatgtctagttttatcatcattcattactattctattcagcttaatatatagattttggcccaccacttggcagcttttgaatttattagt...

Basic information

species Vitis vinifera
transcript Vv16s0039g01410.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351051597|gb|FQ450149.1|FQ450149
EST:     AAGCTCAAAGGGCTCAGACTCTTGCTGCATCCCAAGGTTTGGCTGACAAG                         GTATCTTTCCAAGTTGCAGATGCTCTGGATCAACCGTTTCCTGATGGACAA
genomic: AAGCTCAAAGGGCTCAGACTCTTGCTGCATCCCAAGGTTTGGCTGACAAGgtgcgagttc ... tggttagcagGTATCTTTCCAAGTTGCAGATGCTCTGGATCAACCGTTTCCTGATGGACAA
EST: gi|32249778|gb|CD715597.1|CD715597
EST:     AAGCTCAAAGGGCTCAGACTCTTGCTGCATCCCAAGGTTTGGCTGACAAG                         GTATCTTTCCAAGTTGCAGATGCTCTGGATCAACCGTTTCCTGATGGACAA
genomic: AAGCTCAAAGGGCTCAGACTCTTGCTGCATCCCAAGGTTTGGCTGACAAGgtgcgagttc ... tggttagcagGTATCTTTCCAAGTTGCAGATGCTCTGGATCAACCGTTTCCTGATGGACAA
EST: gi|34547143|gb|CF515375.1|CF515375
EST:     AAGCTCAAAGGGCTCAGACTCTTGCTGCATCCCAAGGTTTGGCTGACAAG                         GTATCTTTCCAAGTTGCAGATGCTCTGGATCAACCGTTTCCTGATGGACAA
genomic: AAGCTCAAAGGGCTCAGACTCTTGCTGCATCCCAAGGTTTGGCTGACAAGgtgcgagttc ... tggttagcagGTATCTTTCCAAGTTGCAGATGCTCTGGATCAACCGTTTCCTGATGGACAA
EST: gi|28960633|gb|CB340324.1|CB340324
EST:     AAGCTCAAAGGGCTCAGACTCTTGCTGCATCCCAAGGTTTGGCTGACAAG                         GTATCTTTCCAAGTTGCAGATGCTCTGGATCAACCGTTTCCTGATGGACAA
genomic: AAGCTCAAAGGGCTCAGACTCTTGCTGCATCCCAAGGTTTGGCTGACAAGgtgcgagttc ... tggttagcagGTATCTTTCCAAGTTGCAGATGCTCTGGATCAACCGTTTCCTGATGGACAA
EST: gi|351032554|gb|FQ458919.1|FQ458919
EST:     AAGCTCAAAGGGCTCAGACTCTTGCTGCATCCCAAGGTTTGGCTGACAAG                         GTATCTTTCCAAGTTGCAGATGCTCTGGATCAACCGTTTCCTGATGGACAA
genomic: AAGCTCAAAGGGCTCAGACTCTTGCTGCATCCCAAGGTTTGGCTGACAAGgtgcgagttc ... tggttagcagGTATCTTTCCAAGTTGCAGATGCTCTGGATCAACCGTTTCCTGATGGACAA
EST: gi|351057048|gb|FQ448565.1|FQ448565
EST:     AAGCTCAAAGGGCTCAGACTCTTGCTGCATCCCAAGGTTTGGCTGACAAG                         GTATCTTTCCAAGTTGCAGATGCTCTGGATCAACCGTTTCCTGATGGACAA
genomic: AAGCTCAAAGGGCTCAGACTCTTGCTGCATCCCAAGGTTTGGCTGACAAGgtgcgagttc ... tggttagcagGTATCTTTCCAAGTTGCAGATGCTCTGGATCAACCGTTTCCTGATGGACAA
EST: gi|352790125|gb|FQ481324.1|FQ481324
EST:     AAGCTCAAAGGGCTCAGACTCTTGCTGCATCCCAAGGTTTGGCTGACAAG                         GTATCTTTCCAAGTTGCAGATGCTCTGGATCAACCGTTTCCTGATGGACAA
genomic: AAGCTCAAAGGGCTCAGACTCTTGCTGCATCCCAAGGTTTGGCTGACAAGgtgcgagttc ... tggttagcagGTATCTTTCCAAGTTGCAGATGCTCTGGATCAACCGTTTCCTGATGGACAA
EST: gi|351033929|gb|FQ462984.1|FQ462984
EST:     AAGCTCAAAGGGCTCAGACTCTTGCTGCATCCCAAGGTTTGGCTGACAAG                         GTATCTTTCCAAGTTGCAGATGCTCTGGATCAACCGTTTCCTGATGGACAA
genomic: AAGCTCAAAGGGCTCAGACTCTTGCTGCATCCCAAGGTTTGGCTGACAAGgtgcgagttc ... tggttagcagGTATCTTTCCAAGTTGCAGATGCTCTGGATCAACCGTTTCCTGATGGACAA
EST: gi|351037069|gb|FQ465061.1|FQ465061
EST:     AAGCTCAAAGGGCTCAGACTCTTGCTGCATCCCAAGGTTTGGCTGACAAG                         GTATCTTTCCAAGTTGCAGATGCTCTGGATCAACCGTTTCCTGATGGACAA
genomic: AAGCTCAAAGGGCTCAGACTCTTGCTGCATCCCAAGGTTTGGCTGACAAGgtgcgagttc ... tggttagcagGTATCTTTCCAAGTTGCAGATGCTCTGGATCAACCGTTTCCTGATGGACAA
EST: gi|351037494|gb|FQ460693.1|FQ460693
EST:     AAGCTCAAAGGGCTCAGACTCTTGCTGCATCCCAAGGTTTGGCTGACAAG                         GTATCTTTCCAAGTTGCAGATGCTCTGGATCAACCGTTTCCTGATGGACAA
genomic: AAGCTCAAAGGGCTCAGACTCTTGCTGCATCCCAAGGTTTGGCTGACAAGgtgcgagttc ... tggttagcagGTATCTTTCCAAGTTGCAGATGCTCTGGATCAACCGTTTCCTGATGGACAA
EST: gi|32248194|gb|CD714013.1|CD714013
EST:     AAGCTCAAAGGGCTCAGACTCTTGCTGCATCCCAAGGTTTGGCTGACAAG                         GTATCTTTCCAAGTTGCAGATGCTCTGGATCAACCGTTTCCTGATGGACAA
genomic: AAGCTCAAAGGGCTCAGACTCTTGCTGCATCCCAAGGTTTGGCTGACAAGgtgcgagttc ... tggttagcagGTATCTTTCCAAGTTGCAGATGCTCTGGATCAACCGTTTCCTGATGGACAA
EST: gi|32247586|gb|CD713405.1|CD713405
EST:     AAGCTCAAAGGGCTCAGACTCTTGCTGCATCCCAAGGTTTGGCTGACAAG                         GTATCTTTCCAAGTTGCAGATGCTCTGGATCAACCGTTTCCTGATGGACAA
genomic: AAGCTCAAAGGGCTCAGACTCTTGCTGCATCCCAAGGTTTGGCTGACAAGgtgcgagttc ... tggttagcagGTATCTTTCCAAGTTGCAGATGCTCTGGATCAACCGTTTCCTGATGGACAA
EST: gi|110376167|gb|EC941211.1|EC941211
EST:     AAGCTCAAAGGGCTCAGACTCTTGCTGCATCCCAAGGTTTGGCTGACAAG                         GTATCTTTCCAAGTTGCAGATGCTCTGGATCAACCGTTTCCTGATGGACAA
genomic: AAGCTCAAAGGGCTCAGACTCTTGCTGCATCCCAAGGTTTGGCTGACAAGgtgcgagttc ... tggttagcagGTATCTTTCCAAGTTGCAGATGCTCTGGATCAACCGTTTCCTGATGGACAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGCTAAGAAGTATGGGGCCAGTTGCCAAGGGATTACTCTCAGTCCCCTCCAAGCTCAAAGGGCTCAGACTCTTGCTGCATCCCAAGGTTTGGCTGACAAGgtgcgagttcatgtctagttttatcatcattcattactattctattcagcttaatatatagattttggcccaccacttggcagcttttgaatttattagt

- - - - - - - - - - - - - - - - - - - - - - - - -  AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccaccac