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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTTGCTAGCAACCAGTTCTTCCAGGGGTTTGGCTATTATTTATCAGTTACCAACTTGCAACATGTCAACTGGGCCTGGACTTGAGTCTCTTGTAGATCgtatgtatactcttaataattcattcttattgcttattatgtaatctctgctgggaaaaaggttgttctattccatggtgtatttttctatccatttttgttttggactttcaggacttttatgattggttcttgcttcgctttatttgtaatcactttcattcttcttttttcttggtgcag

Basic information

species Vitis vinifera
transcript Vv16s0039g00240.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0039g00240.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA15G40590.2 (Glycine max), 5'ss of exon 2
AATTTGCTAGCAACCAGTTCTTCCAGGGGTTTGGCTATTATTTATCAGTTACCAACTTGCAACATGTCAACTGGGCCTGGACTTGAGTCTCTTGTAGATCgtatgtatactcttaataatt-cattcttattgcttattatgtaatctctgctgggaaaaaggt---tgttctattccatggtgtatttttctatccatttttgttttggactttcaggacttttatgattggttcttgcttcgctttatttgtaatcactttcattcttcttttttcttggtgcag
                     | || || |  |  | | || ||||   ||  |||  |||| |||||| |||||||||||||||| |||||||||||||||| ||   || | |||| ||   || |  ||   | ||  | | ||||| |   |  |||  |   |||| |  |     || |    |||||| |||                                                                                        
--------------------GTGCAAGGATAAGTGTGTGATCTATC---TATAAAC--GCAAGATGTCAGCTGGGCCTGGACTTGAATCTCTTGTAGATCgtaagtcatctgtaaatatttatgttttgctttgatgtttggaattctctacatagttaaatctttatgttttgctttgatgtttggaattctatacata---------------------------------------------------------------------------------------

upper sequence: Vv16s0039g00240.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA15G40590.1 (Glycine max), 5'ss of exon 2
AATTTGCTAGCAACCAGTTCTTCCAGGGGTTTGGCTATTATTTATCAGTTACCAACTTGCAACATGTCAACTGGGCCTGGACTTGAGTCTCTTGTAGATCgtatgtatactcttaataatt-cattcttattgcttattatgtaatctctgctgggaaaaaggtt---gttctattccatggtgtatttttctatccatttttgttttggactttcaggacttttatgattggttcttgcttcgctttatttgtaatcactttcattcttcttttttcttggtgcag
              |      | || || |  |  | | || ||||   ||  |||  |||| |||||| |||||||||||||||| |||||||||||||||| ||   || | |||| ||   || |  ||   | ||  | | ||||| |   |  |||  ||   ||| |  |     || |    |||||| |||                                                                                        
-----------CTTCTACAGGTGCAAGGATAAGTGTGTGATCTATC---TATAAAC--GCAAGATGTCAGCTGGGCCTGGACTTGAATCTCTTGTAGATCgtaagtcatctgtaaatatttatgttttgctttgatgtttggaattctctacatagttaaatctttatgttttgctttgatgtttggaattctatacata---------------------------------------------------------------------------------------

upper sequence: Vv16s0039g00240.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA08G18410.2 (Glycine max), 5'ss of exon 2
AATTTGCTAGCAACCAGTTCTTCCAGGGGTTTGGCTATTATTTATCAGTTACCAACTTGCAACATGTCAACTGGGCCTGGACTTGAGTCTCTTGTAGATCgtatgtatactcttaataattcattcttattgcttattatgtaatctctgctgggaaaaaggttgttctattccatggtgtatttttctatccatttttgttttggactttcaggacttttatgattggttcttgcttcgctttatttgtaatcactttcattcttcttttttcttggtgcag
                     | || || |  |  | |||| ||||   ||  |||   ||| |||||| |||||||||||||||| ||||| |||||||||| | | ||  |||   ||| ||  ||  ||||| | ||||         ||| |         || ||| |  ||   |||| || | | |  || |    |     || |  ||   |||                                                            
--------------------GTGCAAGGATAAGTGTGTTATCTATC---TAAAAAC--ACAAGATGTCAGCTGGGCCTGGACTTGAATCTCTAGTAGATCgtaag-acacctttatatatttatgttt--tgctt-tgatgt--------ttggaa---------ttgtatgcattgccatattattttttgcgcttat----taagtattaaaaacaactattt----------------------------------------------------------