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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATAAGTTACTTGATGCGTGTAAAAGACTCGGAGTGCAAACCAGTCCAATGATTATAGATGGCTTGGGAATCATTCCTTTATTCTCTTGGTATCATGAGgtgattggttttgtaatttagttctacctcttgattttagtatgcagtcttgaatcatatctggtggcttgatcaaagtaatgcatattcttcagtccattgttaattgtgatgcttcttttgcag

Basic information

species Vitis vinifera
transcript Vv16s0039g00160.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0039g00160.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA16G33520.1 (Glycine max), 5'ss of exon 2
GAATAAGTTACTTGATGCGTGTAAAAGACTCGGAGTGCAAACCAGTCCAATGATTATAGATGGCTTGGGAATCATTCCTTTATTCTCTTGGTATCATGAGgtgattggttttgtaat--ttagttctacctcttga--ttttagtatgcagtcttgaatcatatctggtggcttgatcaaagtaatgcatattcttcagtccattgttaattgtgatgcttcttttgcag
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GAATAAATTGCTTGATGCGTGTGAGAGAATTGGAGTGGAGACAAATCCAACGGTTATAGATGAAATAGGAATCATTCCTTTGTTCTCTTGGTACCATGAGgtgattacttctaaagtgacaatttttagctcctcagtctttcataccatgtattggtctggatccaaagtgttacttaagggaa---atttatttaaatgc----tcaacc----tgcttctttgacag