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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGACCAAGTGGGTGGCCTTCAAGTGTTTGTAGATGACAAATGGTGGTCCATTAGCCCAAATTTCGATGCCTTTGTTGTTAACATCGGCGACACCTTCATGgtaacctgaatcacgttttcacagacccacttttagttactgttttgcttcaaaaaaaggtttttcaaaaaaggttttcattttttttcattttttctttttcttttttggtttttagtggttgatcataagtgctttgtggggtttttgccatctttcag

Basic information

species Vitis vinifera
transcript Vv16s0022g02310.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0022g02310.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os01g66100.1 (Oryza sativa), 5'ss of exon 2
GGACCAAGTGGGTGGCCTTCAAGTGTTTGTAGATGACAAATGGTGGTCCATTAGCCCAAATTTCGATGCCTTTGTTGTTAACATCGGCGACACCTTCATGgtaacctgaatcacgttttcacagacccacttttagttactgttttgcttcaaaaaaaggtttttcaaaaaaggttttcattttttttcattttttctttttcttttttggtttttagtggttgatcataagtgctttgtggggtttttgccatctttcag
|||| | || || |||||  | ||  | || || | | ||||| |  || | |||||      ||  ||| | ||  | ||||||||||||||||||||||||| |    ||   || ||     | | | | |  |  ||  | |||||| ||  ||       || || | ||  |      ||||  || | |||    |    |||                                                   
GGACGACGTCGGCGGCCTCGAGGTCCTCGTCGACGGCGAATGGCGCCCCGTCAGCCCCGTCCCCGGCGCCATGGTCATCAACATCGGCGACACCTTCATGgtaaaccatctcctattctc-----ctctcctctgtt--ctcctctgcttcgaagcaa-------cagaacaagtaattcaagcttttttttctctctcgcgcgaaattgacga-----------------------------------------------

upper sequence: Vv16s0022g02310.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G049418_T01 (Zea mays), 5'ss of exon 2
GGACCAAGTGGGTGGCCTTCAAGTGTTTGTAGATGACAAATGGTGGTCCATTAGCCCAAATTTCGATGCCTTTGTTGTTAACATCGGCGACACCTTCATGgtaacctgaatcacgttttcacagacccacttttagttactgttttgcttcaaaaaaaggtttttcaaaaaaggttttcattttttttcattttttctttttcttttttggtttttagtggttgatcataagtgctttgtggggtttttgccatctttcag
|||| | ||||| || ||  | ||| | || || |   | ||| |  || |  | ||       |  ||| | ||  | ||||||||||||||||||||||||||   |   | |   || |    |   |||   |  | | | |  | |          | ||||    || | |   | |  | | ||||      |                                                             
GGACGACGTGGGCGGGCTGGAGGTGCTGGTGGACGGTGAGTGGCGCCCCGTCCGGCCCGTCCCGGGCGCCATGGTCATCAACATCGGCGACACCTTCATGgtaacgaaacgaaagcgctcgctcctctgttttccttggccgctcttgtcctgtgtgta--tattcagttgagctctctctgtgctgttatttcccgaatcc-----------------------------------------------------------

upper sequence: Vv16s0022g02310.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G368411_T01 (Zea mays), 5'ss of exon 2
GGACCAAGTGGGTGGCCTTCAAGTGTTTGTAGATGACAAATGGTGGTCCATTAGCCCAAATTTCGATGCCTTTGTTGTTAACATCGGCGACACCTTCATGgtaacctgaatcacgttttcacagacccacttttagttactgttttgcttcaaaaaaaggtttttcaaaaaaggttttcattttttttcattttttctttttcttttttggtttttagtggttgatcataagtgctttgtggggtttttgccatctttcag
|||| | || || || ||  | ||  | || || | | | ||| |  || |  | ||       |  ||| | ||  | ||||||||||||||||||||||||||   |   | |      |    |  |||||  |  |   ||||   |        | |  |    | |    ||||||   ||   | |    ||||                                                            
GGACGACGTCGGCGGGCTGGAGGTCCTGGTGGACGGCGAGTGGCGCCCCGTCCGGCCCGTCCCAGGCGCCATGGTCATCAACATCGGCGACACCTTCATGgtaacg-aacgaaagcgccggctcctctgcttttcttggcctctttgtccctgccctgtgctgctgtgcatattcattcattcagttctctgtggggtttt------------------------------------------------------------

upper sequence: Vv16s0022g02310.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA09G27490.1 (Glycine max), 5'ss of exon 2
GGACCAAGTGGGTGGCCTTCAAGTGTTTGTAGATGACAAATGGTGGTCCATTAGCCCAAATTTCGATGCCTTTGTTGTTAACATCGGCGACACCTTCATGgtaacctgaatcacgttttcacagacccacttttagttactgttttgcttcaaaaaaaggtttttcaaaaaaggttttcattttttttcattttttctttttcttttttggtttttagtggttgatcataagtgctttgtggggtttttgccatctttcag
 ||||||||||| ||||| ||||| ||||| ||  |  | |||   |||||||||||||||||| |||| |||||||| ||||| || |||||||||||||||   |  ||| |  ||| |  |  ||  | ||| ||            |||| || | ||||||    | | | ||  ||||| |   |   |  || || ||  ||                                                    
AGACCAAGTGGGAGGCCTCCAAGTTTTTGTTGACAATGAGTGGCATTCCATTAGCCCAAATTTCAATGCTTTTGTTGTCAACATAGGTGACACCTTCATGgtatgtttgatctctctttgaatgcacctatcttaatt---------tggcaaacaatgatttttcctcgatgatgtttgtttttatcggtaagtgtttgttattaatt----------------------------------------------------

upper sequence: Vv16s0022g02310.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA16G32550.1 (Glycine max), 5'ss of exon 2
GGACCAAGTGGGTGGCCTTCAAGTGTTTGTAGATGACAAATGGTGGTCCATTAGCCCAAATTTCGATGCCTTTGTTGTTAACATCGGCGACACCTTCATGgtaacctgaatcacgttttcacagacccacttttagttactgttttgcttcaaaaaaaggtttttc--aaaaaaggttttcattttttttcattttttctttttcttttttggtttttagtggttgatcataagtgctttgtggggtttttgccatctttcag
 ||||||||||| ||||| ||||| ||||| ||  |  | |||   ||| |||||||||||||| |||| |||||||| ||||| || |||||||||||||||   |   ||  || ||   |  | |   | |      |  ||||   |||| || ||||||||       | ||| ||||| || |||||  ||  ||||  || | ||                                                   
AGACCAAGTGGGAGGCCTCCAAGTTTTTGTTGACAATGAGTGGCATTCCGTTAGCCCAAATTTCAATGCTTTTGTTGTCAACATAGGTGACACCTTCATGgtatgtttggtcttgtctttgaatgcacctatct------taatttgg--caaacaatggtttttcctgtgtgatgttgtcattcttattcatccttgtttttgattatgtgtag------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|77578081|gb|DV217805.1|DV217805
EST:     TTAGCCCAAATTTCGATGCCTTTGTTGTTAACATCGGCGACACCTTCATG                         GCTCTTTCAAATGGAAGGTACAAGAGCTGCTTACATAGGGCAGTGGTAAAC
genomic: TTAGCCCAAATTTCGATGCCTTTGTTGTTAACATCGGCGACACCTTCATGgtaacctgaa ... catctttcagGCTCTTTCAAATGGAAGGTACAAGAGCTGCTTACATAGGGCAGTGGTAAAC