Sequence
atgc intronic sequence ATGC exonic sequenceCTTTGCTCAATCCAATATCGTGTGATTAAAGAAAATGCGGATGATGCCTTTTATGAGTTACAGAACCCCAAAGAGCAGATTCAGGCTTTTGTGTTTGATGgtaacttttgcatggttatctggaaatttttagccatattatgcagtaaattttctggttttttggtttctttcacccttgattcttgatgctattctgatgatgcattttgttgtgtgttgcaag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv16s0022g01690.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os06g04460.1 (Oryza sativa), 5'ss of exon 2
CTTTGCTCAATCCAATATCGTGTGATTAAAGAAAATGCGGATGATGCCTTTTATGAGTTACAGAACCCCAAAGAGCAGATTCAGGCTTTTGTGTTTGATGgtaacttttgcatggttatctggaaatttttagccatattatgcagtaaattttctggttttttggtttctttcacccttgattcttgatgctattctgatgatgcattttgttgtgtgttgcaag
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ATCTGCACAATCCAATATCGGGTTGTTAAGGAACATGCTGATGATGCATTCTATGAGTTGCAGAATCCCCAACAGCAAATTCAGGCCTACGTCTTTGATGgtaaaattatta-----atattgaacaattcagctgttgctcatagcaaatta-ctgactcaaaaatctaac-cactttt--tccttgaaatcag-------------------------------
upper sequence: Vv16s0022g01690.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT5G51570.1 (Arabidopsis thaliana), 5'ss of exon 2
CTTTGCTCAATCCAATATCGTGTGATTAAAGAAAATGCGGATGATGCCTTTTATGAGTTACAGAACCCCAAAGAGCAGATTCAGGCTTTTGTGTTTGATGgtaacttttgcatggttatctggaaatttttagccatattatgcagtaaattttctggttttttggtttctttcacccttgattcttgatgctattctgatgatgcattttgttgtgtgttgcaag
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GTTTGTTCGATTCAGTATCGTGTAGTGAAAGCTAGTGCTGATGATGCGTTTTATGAGCTTCAAAACCCTAAAGAGCAGATCCAAGCTTATGTCTTTGATGgtaatttttttgcttctctgttgatgttttttgtttctttgtttgaagaagctct--gttttgattcttgatttgttcttgtatgtt--tgttttttgaatcatag--------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161716029|gb|FC065535.1|FC065535EST: TTATGAGTTACAGAACCCCAAAGAGCAGATTCAGGCTTTTGTGTTTGATG TGGTTCGAGCTCATGTTCCAAGAATGACTTTGGATGAGCTGTTTGAACAAA
genomic: TTATGAGTTACAGAACCCCAAAGAGCAGATTCAGGCTTTTGTGTTTGATGgtaacttttg ... gtgttgcaagTGGTTCGAGCTCATGTTCCAAGAATGACTTTGGATGAGCTGTTTGAACAAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTTTGCTCAATCCAATATCGTGTGATTAAAGAAAATGCGGATGATGCCTTTTATGAGTTACAGAACCCCAAAGAGCAGATTCAGGCTTTTGTGTTTGATGgtaacttttgcatggttatctggaaatttttagccatattatgcagtaaattttctggttttttggtttctttcacccttgattcttgatgctattctgatgatgcattttgttgtgtgttgcaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT