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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAACTATGCCAAGGGAAAAAGAATAGCATTGTTTCTGGACTATGATGGGACTCTCTCACCTATTGTAGACAACCCTGACCGAGCCTTCATGTCTGATTGTgtgagaatcctgtttgcttgagttcatctataattgagaatgttaagattctttttattttctttggaaaagattttcactttcttttttgcactgatattcttgtgcatgttggcag

Basic information

species Vitis vinifera
transcript Vv16s0022g00660.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0022g00660.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA06G47630.2 (Glycine max), 5'ss of exon 2
GAACTATGCCAAGGGAAAAAGAATAGCATTGTTTCTGGACTATGATGGGACTCTCTCACCTATTGTAGACAACCCTGACCGAGCCTTCATGTCTGATTGTgtgag-aatcctgtttgcttgagttcatctataattgagaatgttaagattctttttattttctttggaaaagattttcactttcttttttgcactgatattcttgtgcatgttggcag
 |||| ||| || ||||| |||||||||||||||||||| |||||||| ||||| ||||| ||||| ||||| |||||| | || |||||||| ||   |||  | ||| |||| |       || || ||   |  ||| | | ||     | ||| | |||| | |  |  |  || |   |||  |     |||| | |  ||             
CAACTGTGCAAAAGGAAAGAGAATAGCATTGTTTCTGGATTATGATGGAACTCTTTCACCCATTGTGGACAATCCTGACTGTGCTTTCATGTCAGACAATgtatgtaatgctgtctt------ttgatttagtgtccagattttcaattaggtgtttttcttctcttgttattaccttgatgatctgatc----ctgaaacttctgcag----------

upper sequence: Vv16s0022g00660.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA04G13880.1 (Glycine max), 5'ss of exon 3
GAACTATGCCAAGGGAAAAAGAATAGCATTGTTTCTGGACTATGATGGGACTCTCTCACCTATTGTAGACAACCCTGACCGAGCCTTCATGTCTGATTGTgtgagaatcctgtttgcttgagttcatctataattgagaatgttaagattctttttattttctttggaaaagattttcactttctt--ttttgcactgatattcttgtgcatgttggcag
 |||| ||| || || || |||||||||||||||||||| |||||||||||||| ||||| ||||| || || ||||||   || |||||||| ||   |||  | |   || |  |||   || || ||   |  ||| | | |      | ||| | ||||       |  || |  ||||  |  | |  | |||| | |  ||             
CAACTGTGCAAAAGGGAAGAGAATAGCATTGTTTCTGGATTATGATGGGACTCTTTCACCCATTGTGGATAATCCTGACTCTGCTTTCATGTCAGACAATgtatgtaa--tgctctctt---ttgatttagtgtccagattttcagttagatgtttttcttctc------atgttgttgctttgctgatctgaccctgaaacttctgcag----------

upper sequence: Vv16s0022g00660.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT5G51460.2 (Arabidopsis thaliana), 5'ss of exon 2
GAACTATGCCAAGGGAAAAAGAATAGCATTGTTTCTGGACTATGATGGGACTCTCTCACCTATTGTAGACAACCCTGACCGAGCCTTCATGTCTGATTGTgtgagaatcctgtttgcttgagttca--tctataattgagaatgttaagattctt--tttattttctttggaaaagat-tttcactttcttttttgcactgatattcttgtgcatgttggcag
||  | ||| || || |||||||||||||||||||| || ||||| ||||| || || |||||||| ||  | |||||  | || | ||||||   |  ||| ||  |     || | |   || |  || ||   | | |  | | | |||  |  || ||  || |    ||  || |    |   | ||||| ||    ||                   
GAGTTTTGCAAAAGGCAAAAGAATAGCATTGTTTCTTGATTATGACGGGACACTTTCGCCTATTGTTGAGGAACCTGATTGTGCATACATGTCAAGTGCTgtaagtttttaactttcctctattaaattcaattgctaaaacagatcaaatttgtgattcatcctcataatgaattatatggttcacgcctttttacatgtttag------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110365313|gb|EC928101.1|EC928101
EST:     CTCTCTCACCTATTGTAGACAACCCTGACCGAGCCTTCATGTCTGATTGT                         ATGCGTGCTACTGTGAGAAACGTGGCTAAATTTTTCCCAACCGCAATAATT
genomic: CTCTCTCACCTATTGTAGACAACCCTGACCGAGCCTTCATGTCTGATTGTgtgagaatcc ... atgttggcagATGCGTGCTACTGTGAGAAACGTGGCTAAGTTTTTCCCAACCGCAATAATT