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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAAGACAGTTAAATTGGAAAGTTGAAGTAGCTATGAAATTATATTCGCACATTGTGTAACAAGAATGCCAGGCATACCTTTAGTGGCTCGTGAAACAATgtaggtcctttaagatggtatttatcgttacttctgtattttgtatgggtactttcaactagggtgatgctaatgtcccaagtaactgttctctttatct...

Basic information

species Vitis vinifera
transcript Vv16s0013g00860.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71857220|gb|DT006275.1|DT006275
EST:     CATTGTGTAACAAGAATGCCAGGCATACCTTTAGTGGCTCGTGAAACAAT                         CTATTCTAGAAGTGCAGATCAGATGTGCCGCCAAGATTCTCGTGTGCACTT
genomic: CATTGTGTAACAAGAATGCCAGGCATACCTTTAGTGGCTCGTGAAACAATgtaggtcctt ... gcaattgcagCTATTCTAGAAGTGCAGATCAGATGTGCCGCCAAGATTCTCGTGTGCACTT
EST: gi|71858828|gb|DT007883.1|DT007883
EST:     CATTGTGTAACAAGAATGCCAGGCATACCTTTAGTGGCTCGTGAAACAAT                         CTATTCTAGAAGTGCAGATCAGATGTGCCGCCAAGATTCTCGTGTGCACTT
genomic: CATTGTGTAACAAGAATGCCAGGCATACCTTTAGTGGCTCGTGAAACAATgtaggtcctt ... gcaattgcagCTATTCTAGAAGTGCAGATCAGATGTGCCGCCAAGATTCTCGTGTGCACTT
EST: gi|294966637|gb|GW839628.1|GW839628
EST:     CATTGTGTAACAAGAATGCCAGGCATACCTTTAGTGGCTCGTGAAACAAT                         CTATTCTAGAAGTGCAGATCAGATGTGCCGCCAAGATTCTCGTGTGCACTT
genomic: CATTGTGTAACAAGAATGCCAGGCATACCTTTAGTGGCTCGTGAAACAATgtaggtcctt ... gcaattgcagCTATTCTAGAAGTGCAGATCAGATGTGCCGCCAAGATTCTCGTGTGCACTT
EST: gi|71857221|gb|DT006276.1|DT006276
EST:     CATTGTGTAACAAGAATGCCAGGCATACCTTTAGTGGCTCGTGAAACAAT                         CTATTCTAGAAGTGCAGATCAGATGTGCCGCCAAGATTCTCGTGTGCACTT
genomic: CATTGTGTAACAAGAATGCCAGGCATACCTTTAGTGGCTCGTGAAACAATgtaggtcctt ... gcaattgcagCTATTCTAGAAGTGCAGATCAGATGTGCCGCCAAGATTCTCGTGTGCACTT
EST: gi|352773493|gb|FQ472275.1|FQ472275
EST:     CATTGTGTAACAAGAATGCCAGGCATACCTTTAGTGGCTCGTGAAACAAT                         CTATTCTAGAAGTGCAGATCAGATGTGCCGCCAAGATTCTCGTGTGCACTT
genomic: CATTGTGTAACAAGAATGCCAGGCATACCTTTAGTGGCTCGTGAAACAATgtaggtcctt ... gcaattgcagCTATTCTAGAAGTGCAGATCAGATGTGCCGCCAAGATTCTCGTGTGCACTT
EST: gi|37190228|gb|CF609577.1|CF609577
EST:     CATTGTGTAACAAGAATGCCAGGCATACCTTTAGTGGCTCGTGAAACAAT                         CTATTCTAGAAGTGCAGATCAGATGTGCCGCCAAGATTCTCGTGTGCACTT
genomic: CATTGTGTAACAAGAATGCCAGGCATACCTTTAGTGGCTCGTGAAACAATgtaggtcctt ... gcaattgcagCTATTCTAGAAGTGCAGATCAGATGTGCCGCCAAGATTCTCGTGTGCACTT
EST: gi|352772284|gb|FQ469809.1|FQ469809
EST:     CATTGTGTAACAAGAATGCCAGGCATACCTTTAGTGGCTCGTGAAACAAT                         CTATTCTAGAAGTGCAGATCAGATGTGCCGCCAAGATTCTCGTGTGCACTT
genomic: CATTGTGTAACAAGAATGCCAGGCATACCTTTAGTGGCTCGTGAAACAATgtaggtcctt ... gcaattgcagCTATTCTAGAAGTGCAGATCAGATGTGCCGCCAAGATTCTCGTGTGCACTT
EST: gi|352774235|gb|FQ474758.1|FQ474758
EST:     CATTGTGTAACAAGAATGCCAGGCATACCTTTAGTGGCTCGTGAAACAAT                         CTATTCTAGAAGTGCAGATCAGATGTGCCGCCAAGATTCTCGTGTGCACTT
genomic: CATTGTGTAACAAGAATGCCAGGCATACCTTTAGTGGCTCGTGAAACAATgtaggtcctt ... gcaattgcagCTATTCTAGAAGTGCAGATCAGATGTGCCGCCAAGATTCTCGTGTGCACTT
EST: gi|161716717|gb|FC067838.1|FC067838
EST:     CATTGTGTAACAAGAATGCCAGGCATACCTTTAGTGGCTCGTGAAACAAT                         CTATTCTAGAAGTGCAGATCAGATGTGCCGCCAAGATTCTCGTGTGCACTT
genomic: CATTGTGTAACAAGAATGCCAGGCATACCTTTAGTGGCTCGTGAAACAATgtaggtcctt ... gcaattgcagCTATTCTAGAAGTGCAGATCAGATGTGCCGCCAAGATTCTCGTGTGCACTT
EST: gi|352768738|gb|FQ467950.1|FQ467950
EST:     CATTGTGTAACAAGAATGCCAGGCATACCTTTAGTGGCTCGTGAAACAAT                         CTATTCTAGAAGTGCAGATCAGATGTGCCGCCAAGATTCTCGTGTGCACTT
genomic: CATTGTGTAACAAGAATGCCAGGCATACCTTTAGTGGCTCGTGAAACAATgtaggtcctt ... gcaattgcagCTATTCTAGAAGTGCAGATCAGATGTGCCGCCAAGATTCTCGTGTGCACTT