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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTCCTGGATTGGATCAACGGATTATGGATGAGACATTGGTGAGTGACTATGCTCAGCACAATGATGCCATTTTGCTGGTTATTGTACCTGCTGTCCAGgtgtagaccctcaattttgtccctttagcacatgtctttaaatccacttccagtgctccacggtagttccttggtggcccattactactcgtacaactta...

Basic information

species Vitis vinifera
transcript Vv15s0107g00170.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0107g00170.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA12G37100.1 (Glycine max), 5'ss of exon 6
-------------TTTTCCTGG--ATTGGATCAACGGATTATGGATGAGACATTGGTGAGTGACTATGCTCAGCACAATGATGCCATTTTGCTGGTTATTGTACCTGCTGTCCAGgtgtagaccctcaattttgtccctttagcacatgtctttaaatccacttccagtgctccacggtagttccttggtggcccattactactcgtacaactta-----------------------------------
             |||| || |  |||| | |  | | | | | |   || |||| |   |  | |  |  |  | |   |    | | || |||  |  |||    ||||     ||       | |   || |   || |  | |  |  |  ||| |   |  ||| ||   | | | ||||||          || ||    | | | |                                     
CACAATGATGCCATTTTGCTAGTTATTGTACCTGCAGCTCAAGCACCTGAAATTGCTTCATCTCGAGCCCTAAAATATGCAAAGGAATATGATGGAGAAGgtag--actgtttgcatggttctttttaggattattg-ttaaataaaacttgtggaattcttcttgagtacttgtctg-atttccttctctattaggtattagctttgccattgttaattgactaaataggcgaaaacatattttcgtag

upper sequence: Vv15s0107g00170.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA09G00430.1 (Glycine max), 5'ss of exon 6
-------------TTTTCCTGG--ATTGGATCAACGGATTATGGATGAGACATTGGT-------GAGT----GACTATGCTCAGCACAATGATG-----------CCATTTTGCTGGTTATTGTACCTGCTGTCCAGgtgtagaccctcaattttgtccctttagcacatgtctttaaatccacttccagtgctccacggtagttccttggtggcccatt-actactcgtacaactta------------
             |||| || |  |||| | |  | | | | | |   || |||| |       |||      | |||||  || |  ||||||           |  |||     ||| || ||     | |      ||| | |        | |  ||| || || |||||    ||   ||||   |         |||||  ||  | |   ||| ||||      |||   |            
CATAATGATGCCATTTTGCTAGTTATTGTACCTGCAGTTCAAGCACCTGAAATTGCTTCATCTCGAGCCCTAAAATATGCAAAGGAATATGATGGAGAAGgtagactgtttccactgtttttttaaggattattgttacgtaaaactcatggaatttttcttgagtacttgtct---gatttccttctc-tatcaggtattagttttttcattgttaattgactaaataggcaaaaaaatattttgatag