1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TCCTCCTCATGGTTCTGAAATTTTCATTGGTGGGCTTCCTCGAGAAGCCTTGGAAGAAGATCTGAGGGATCTGTGTGAACCGATTGGCGAAGCTTTGGAGgtgaaaactgcagcatatatgacttttctttgttggagattttcaatatggtttcaatttcataataattttgcag
species | Vitis vinifera |
transcript | Vv15s0048g02700.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TGGAAGAAGATCTGAGGGATCTGTGTGAACCGATTGGCGAAGCTTTGGAG GTAAGGCTGATGAAAAATAGGGATTCAGGTGAAAGCAAGGGTTATGCTTTTEST: gi|349833094|gb|FQ416472.1|FQ416472
genomic: TGGAAGAAGATCTGAGGGATCTGTGTGAACCGATTGGCGAAGCTTTGGAGgtgaaaactg ... aattttgcagGTAAGGCTGATGAAAAATAGGGATTCAGGTGAAAGCAAGGGTTATGCTTTT
EST: TGGAAGAAGATCTGAGGGATCTGTGTGAACCGATTGGCGAAGCTTTGGAG GTAAGGCTGATGAAAAATAGGGATTCAGGTGAAAGCAAGGGTTATGCTTTTEST: gi|351020125|gb|FQ445732.1|FQ445732
genomic: TGGAAGAAGATCTGAGGGATCTGTGTGAACCGATTGGCGAAGCTTTGGAGgtgaaaactg ... aattttgcagGTAAGGCTGATGAAAAATAGGGATTCAGGTGAAAGCAAGGGTTATGCTTTT
EST: TGGAAGAAGATCTGAGGGATCTGTGTGAACCGATTGGCGAAGCTTTGGAG GTAAGGCTGATGAAAAATAGGGATTCAGGTGAAAGCAAGGGTTATGCTTTTEST: gi|110381778|gb|EC935359.1|EC935359
genomic: TGGAAGAAGATCTGAGGGATCTGTGTGAACCGATTGGCGAAGCTTTGGAGgtgaaaactg ... aattttgcagGTAAGGCTGATGAAAAATAGGGATTCAGGTGAAAGCAAGGGTTATGCTTTT
EST: TGGAAGAAGATCTGAGGGATCTGTGTGAACCGATTGGCGAAGCTTTGGAG GTAAGGCTGATGAAAAATAGGGATTCAGGTGAAAGCAAGGGTTATGCTTTTEST: gi|351015298|gb|FQ445582.1|FQ445582
genomic: TGGAAGAAGATCTGAGGGATCTGTGTGAACCGATTGGCGAAGCTTTGGAGgtgaaaactg ... aattttgcagGTAAGGCTGATGAAAAATAGGGATTCAGGTGAAAGCAAGGGTTATGCTTTT
EST: TGGAAGAAGATCTGAGGGATCTGTGTGAACCGATTGGCGAAGCTTTGGAG GTAAGGCTGATGAAAAATAGGGATTCAGGTGAAAGCAAGGGTTATGCTTTTEST: gi|351019214|gb|FQ429374.1|FQ429374
genomic: TGGAAGAAGATCTGAGGGATCTGTGTGAACCGATTGGCGAAGCTTTGGAGgtgaaaactg ... aattttgcagGTAAGGCTGATGAAAAATAGGGATTCAGGTGAAAGCAAGGGTTATGCTTTT
EST: TGGAAGAAGATCTGAGGGATCTGTGTGAACCGATTGGCGAAGCTTTGGAG GTAAGGCTGATGAAAAATAGGGATTCAGGTGAAAGCAAGGGTTATGCTTTTEST: gi|161713778|gb|FC063778.1|FC063778
genomic: TGGAAGAAGATCTGAGGGATCTGTGTGAACCGATTGGCGAAGCTTTGGAGgtgaaaactg ... aattttgcagGTAAGGCTGATGAAAAATAGGGATTCAGGTGAAAGCAAGGGTTATGCTTTT
EST: TGGAAGAAGATCTGAGGGATCTGTGTGAACCGATTGGCGAAGCTTTGGAG GTAAGGCTGATGAAAAATAGGGATTCAGGTGAAAGCAAGGGTTATGCTTTT
genomic: TGGAAGAAGATCTGAGGGATCTGTGTGAACCGATTGGCGAAGCTTTGGAGgtgaaaactg ... aattttgcagGTAAGGCTGATGAAAAATAGGGATTCAGGTGAAAGCAAGGGTTATGCTTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCTCCTCATGGTTCTGAAATTTTCATTGGTGGGCTTCCTCGAGAAGCCTTGGAAGAAGATCTGAGGGATCTGTGTGAACCGATTGGCGAAGCTTTGGAGgtgaaaactgcagcatatatgacttttctttgttggagattttcaatatggtttcaatttcataataattttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG