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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGACTCTGGTGTTCTATAAAGGCCGAGCCCCACATGGCCAAAAATCTGACTGGATCATGCATGAGTACAGACTTGATGATAACACCAATGATACCCAGgtcagccatttgatttttcagcttagttttggcttgaaatttcagtttggagtagtgttccattgaccttacaaactgggttataatggtaacctgcag

Basic information

species Vitis vinifera
transcript Vv15s0048g02660.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0048g02660.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA07G05660.1 (Glycine max), 5'ss of exon 2
GAAGACTCTGGTGTTCTATAAAGGCCGAGCCCCACATGGCCAAAAATCTGACTGGATCATGCATGAGTACAGACTTGATGATAA---CACCAATGATACCCAGgtc---agccatttgatttttca-gcttagtt--ttggcttgaaatttcagtttggagtagtgttccattgaccttacaaactgggttataatgg-taacctgcag-
      |||||| ||||| |||||  |||||||||||||||| ||||| || |||||||||||||| |||||||| || || ||   ||||  ||| ||| |  |    ||| | |  |      | |  |||||  || | |   | || || | |  ||     ||  ||| |||    |     |||| |||    | | ||| |  
------TCTGGTTTTCTACAAAGGAAGAGCCCCACATGGCCAGAAATCCGATTGGATCATGCATGAATACAGACTAGACGACAACAACACCGCTGACACCAATATTgtaagcaactcaaacacaaacgactagttagttagtt---agttacaatctctagcta-atttaattaaccagttattgaaggttttaaaaaatgatctgtaat

upper sequence: Vv15s0048g02660.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA16G02200.1 (Glycine max), 5'ss of exon 2
GAAGACTCTGGTGTTCTATAAAGGCCGAGCCCCACATGGCCAAAAATCTGACTGGATCATGCATGAGTACAGACTTGATGATAA---CACCAATGATACCCAGgtc--agccatttgatttttcagcttagttttggcttga----aatttcagtttggagt-agtgttccattgaccttacaaactgggttataatggtaacctgcag
      |||||| ||||| |||||  |||| ||||||||||| ||||| || |||||||||||||| |||||||| || || ||   |||||  || | | |  |   |  ||    | |    || || |||     || |    ||||| | || | ||| |      |       ||| |||  |      ||||||||  ||   
------TCTGGTTTTCTACAAAGGAAGAGCGCCACATGGCCAGAAATCCGATTGGATCATGCATGAATACAGACTAGACGACAACAACACCAGCGACATCAATATTgtaagcaacacactagctag-ttggttacaatttcatgcgaatttaatttagcagttatcacaaccaaagttttaaaaaacgatcagcaatggtaatttgg--