Sequence
atgc intronic sequence ATGC exonic sequenceTATACTATTACCAAGCAGCGGGAGCGATGGACAGAGGAGGAGCATAATAGGTTTCTGGAGGCCTTGAAGCTTTATGGGCGAGCTTGGCAACGTATAGAAGgtaataaattttttccaacctcaacttattacgtttcttctatttcttttatttttatacatctatataatgagttggggttgcaacttacattcagagt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0048g02410.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G175265_T01 (Zea mays), 5'ss of exon 3
TATACTATTACCAAGCAGCGGGAGCGATGGACAGAGGAGGAGCATAATAGGTTTCTGGAGGCCTTGAAGCTTTATGGGCGAGCTTGGCAACGTATAGAAGgtaataaattttttccaacctcaacttattacgtttcttctatt-tcttttatttttatacatctatataatgagttggggttgcaacttacattcagagt
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TACACAATAACCAAGCAGCGGGAGCGGTGGACAGAGGCTGAGCACAAACGGTTCCTTGAAGCCTTGAAACTTTATGGCAGAGCATGGCAGCGCATAGAAGgtaaaatatccatagcggctgtatccaagtagttttatgctattatttcctgacttcat-cacttgtaaccagtgttattaaaactacgtttaaacgatgt
upper sequence: Vv15s0048g02410.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G014902_T01 (Zea mays), 5'ss of exon 7
TATACTATTACCAAGCAGCGGGAGCGATGGACAGAGGAGGAGCATAATAGGTTTCTGGAGGCCTTGAAGCTTTATGGGCGAGCTTGGCAACGTATAGAAGgtaataaattttttccaacctcaacttattacgtttcttctatttcttttatttttatacatctatataatgagttggggttgca-acttacat-tcagagt-
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TACACAATAACGAAGCAGCGGGAGCGGTGGACAGAGGCTGAACACAAACGGTTCCTTGAAGCCTTGAAACTTTATGGCAGAGCATGGCAGCGCATAGAAGgtaa--aatctctaccgtttgtttcgttggaattgaattccattcttataatcataatttagacaca-aactaattaagttaatatatttgtatattatccta
upper sequence: Vv15s0048g02410.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA07G05410.3 (Glycine max), 5'ss of exon 4
TATACTATTACCAAGCAGCGGGAGCGATGGACAGAGGAGGAGCATAATAGGTTTCTGGAGGCCTTGAAGCTTTATGGGCGAGCTTGGCAACGTATAGAAGgtaataaattttttccaacctcaacttattacgtttcttctatttcttttatttttatacatctatataatg----agttggggttgcaactt-acattcagagt---------------------------------------------------------------------------
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TATACAATCACTAAGCAAAGGGAACGATGGACAGAGGAGGAGCATAATAGGTTTCTTGAAGCTTTGAAACTACACGGGCGAGCATGGCAGCGCATAGAAGgtgatagtgtgtttatcatttctacttga-agatcttctctttttcttcc-tttctaaacattggtgtaacattctagtagaaaatggatcttcatatttgatttattcttgattggatctgtctttttctttattccatggcttggcccccttcttggtgtttcacttctgctgtacag
upper sequence: Vv15s0048g02410.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA16G01980.4 (Glycine max), 5'ss of exon 3
TATACTATTACCAAGCAGCGGGAGCGATGGACAGAGGAGGAGCATAATAGGTTTCTGGAGGCCTTGAAGCTTTATGGGCGAGCTTGGCAACGTATAGAAGgtaataaattttttccaacctcaacttattacgtttcttctatttcttttatttttatacatctatataatgagttggggttgcaacttacattcagagt--
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TATACAATCACTAAGCAAAGGGAACGATGGACAGAGGAGGAGCATAATAGGTTTCTAGAAGCTTTGAAACTACACGGGCGAGCATGGCAGCGCATAGAAGgtgatag-tgtgttgtacttgaagattatctc-ttgttcttcctatataaagattggtgtaatattctagtagaaaatggcatgaactgatcttcatatttg
upper sequence: Vv15s0048g02410.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA19G45030.1 (Glycine max), 5'ss of exon 2
TATACTATTACCAAGCAGCGGGAGCGATGGACAGAGGAGGAGCATAATAGGTTTCTGGAGGCCTTGAAGCTTTATGGGCGAGCTTGGCAACGTATAGAAGgtaataaattttttccaacctcaacttattacgtttcttctatttcttttatttttatacatctatataatgagttggggttgcaacttacattcagagt----
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TATACTATCACAAAGCAAAGAGAACGATGGACAGAGGAGGAACATAACAGATTTCTAGAAGCCTTGAAGCTATACGGGCGAGCATGGCAGCGCATAGAAGgcaata--ttatgctcaccattaatactttatatatacttcatatcttc-agatgcataaatgcatttta-gattgccaaataatcttgatatctagcatacta
upper sequence: Vv15s0048g02410.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA03G42260.2 (Glycine max), 5'ss of exon 4
TATACTATTACCAAGCAGCGGGAGCGATGGACAGAGGAGGAGCATAATAGGTTTCTGGAGGCCTTGAAGCTTTATGGGCGAGCTTGGCAACGTATAGAAGgtaataaattttttccaacctcaacttattacgtttcttctatttcttttatttttatacatctatataatgagttggggttgcaacttacattcagagt----
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TATACTATCACAAAGCAAAGAGAACGATGGACAGAGGAGGAACATAACAGATTTCTAGAAGCCTTGAAGCTATACGGGCGAGCATGGCAGCGCATAGAAGgcaata--ttttgctcaccattaatactttatatatacttcatatcttc-agatgcataaatgcattttagattgcccaataatca-tgatatctagcatactc
upper sequence: Vv15s0048g02410.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT1G01060.2 (Arabidopsis thaliana), 5'ss of exon 3
TATACTATTACCAAGCAGCGGGAGCGATGGACAGAGGAGGAGCATAATAGGTTTCTGGAGGCCTTGAAGCTTTATGGGCGAGCTTGGCAACGTATAGAAGgtaataaattt---tttccaacctcaacttattacgtttc----ttctat-ttcttttatttttatacatctatata-----atgagttgg-ggttgcaacttacattcagagt----------
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TATACAATAACAAAGCAGCGAGAGCGATGGACTGAGGATGAGCATGAGAGGTTTCTAGAAGCCTTGAGGCTTTATGGAAGAGCTTGGCAACGAATTGAAGgtcgaaagtttatcttttgaatgtttagtttgaactctttgagattttatattcctttgtttaggagtgtctttatctcctcttgattgggagattccttcttttcttttcattttgtgtgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30322809|gb|CD006071.1|CD006071EST: GGCAACGTATAGAAG AACATATAGGAACAAAGACTGCTGTGCAAATCAGAAGTCATGCACAAAAAT
genomic: GGCAACGTATAGAAGgtaataaatt ... tggtgtgcagAACATATAGGAACAAAGACTGCTGTGCAAATCAGAAGTCATGCACAAAAAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TATACTATTACCAAGCAGCGGGAGCGATGGACAGAGGAGGAGCATAATAGGTTTCTGGAGGCCTTGAAGCTTTATGGGCGAGCTTGGCAACGTATAGAAGgtaataaattttttccaacctcaacttattacgtttcttctatttcttttatttttatacatctatataatgagttggggttgcaacttacattcagagt
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT