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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGAGGCGCAGGGAGCACGATCACCGGCGACCAGACGATCTGATCTCACCGACGAAGCTTTTCCGGAGGAGGCTTCCAGgtatgccatctcatttcctcgttctttattctacttggagtgggggagaggtcgggattctccttcttctttctctgggctggatagggctatggttggc...

Basic information

species Vitis vinifera
transcript Vv15s0048g02350.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110711108|gb|EE087281.1|EE087281
EST:     ACCAGACGATCTGATCTCACTGACGAAGCTTTTCCGGAGGAGGCTTCCGG                         GAACATGAATTTCAACAATGTCAAAGTTCCCAAGGTGCCAGGTGGTGGTGC
genomic: ACCAGACGATCTGATCTCACCGACGAAGCTTTTCCGGAGGAGGCTTCCAGgtatgccatc ... tcctgttcagGAACATGAATTTCAACAATGTCAAAGTTCCCAAGGTGCCAGGCGGTGGTGC
EST: gi|161716355|gb|FC066866.1|FC066866
EST:     ACCAGACGATCTGATCTCACCGACGAAGCTTTTCCGGAGGAGGCTTCCAG                         GAACATGAATTTCAACAATGTCAAAGTTCCCAAGGTGCCAGGCGGTGGTGC
genomic: ACCAGACGATCTGATCTCACCGACGAAGCTTTTCCGGAGGAGGCTTCCAGgtatgccatc ... tcctgttcagGAACATGAATTTCAACAATGTCAAAGTTCCCAAGGTGCCAGGCGGTGGTGC
EST: gi|22013946|gb|BQ798980.1|BQ798980
EST:     ACCAGACGATCTGATCTCACTGACAAAGCTTTTCCGGAGGAGGCTTCCAG                         GAACATGAATTTCAACAATGTCAAAGTTCCCAAGGTGCCAGGTGGTGGTGC
genomic: ACCAGACGATCTGATCTCACCGACGAAGCTTTTCCGGAGGAGGCTTCCAGgtatgccatc ... tcctgttcagGAACATGAATTTCAACAATGTCAAAGTTCCCAAGGTGCCAGGCGGTGGTGC
EST: gi|110708454|gb|EE086015.1|EE086015
EST:     ACCAGACGATCTGATCTCACTGACGAAGCTTTTCCGGAGGAGGCTTCCAG                         GAACATGAATTTCAACAATGTCAAAGTTCCCAAGGTGCCAGGTGGTGGTGC
genomic: ACCAGACGATCTGATCTCACCGACGAAGCTTTTCCGGAGGAGGCTTCCAGgtatgccatc ... tcctgttcagGAACATGAATTTCAACAATGTCAAAGTTCCCAAGGTGCCAGGCGGTGGTGC
EST: gi|30297423|gb|CB974217.1|CB974217
EST:     ACCAGACGATCTGATCTCACCGACGAAGCTTTTCCGGAGGAGGCTTCCAG                         GAACATGAATTTCAACAATGTCAAAGTTCCCAAGGTGCCAGGCGGTGGTGC
genomic: ACCAGACGATCTGATCTCACCGACGAAGCTTTTCCGGAGGAGGCTTCCAGgtatgccatc ... tcctgttcagGAACATGAATTTCAACAATGTCAAAGTTCCCAAGGTGCCAGGCGGTGGTGC
EST: gi|110720744|gb|EE096932.1|EE096932
EST:     ACCAGACGATCTGATCTCACTGACGAAGCTTTTCCGGAGGAGGCTTCCAG                         GAACATGAATTTCAACAATGTCAAAGTTCCCAAGGTGCCAGGTGGTGGTGC
genomic: ACCAGACGATCTGATCTCACCGACGAAGCTTTTCCGGAGGAGGCTTCCAGgtatgccatc ... tcctgttcagGAACATGAATTTCAACAATGTCAAAGTTCCCAAGGTGCCAGGCGGTGGTGC
EST: gi|110699664|gb|EE076859.1|EE076859
EST:     ACCAGACGATCTGATCTCACTGACGAAGCTTTTCCGGTTGAGGCCCCCAG                         GAACATGAATTTCAACAATGTCAAAGTTCCCAAGGTGCCAGGTGGTGGTGC
genomic: ACCAGACGATCTGATCTCACCGACGAAGCTTTTCCGGAGGAGGCTTCCAGgtatgccatc ... tcctgttcagGAACATGAATTTCAACAATGTCAAAGTTCCCAAGGTGCCAGGCGGTGGTGC
EST: gi|71862826|gb|DT011881.1|DT011881
EST:     ACCAGACGATCTGATCTCACTGACGAAGCTTTTCCGGAGGAGGCTTCCAG                         GAACATGAATTTCAACAATGTCAAAGTTCCCAAGGTGCCAGGTGGTGGTGC
genomic: ACCAGACGATCTGATCTCACCGACGAAGCTTTTCCGGAGGAGGCTTCCAGgtatgccatc ... tcctgttcagGAACATGAATTTCAACAATGTCAAAGTTCCCAAGGTGCCAGGCGGTGGTGC
EST: gi|161720129|gb|FC065124.1|FC065124
EST:     ACCAGACGATCTGATCTCACCGACGAAGCTTTTCCGGAGGAGGCTTCCAG                         GAACATGAATTTCAACAATGTCAAAGTTCCCAAGGTGCCAGGCGGTGGTGC
genomic: ACCAGACGATCTGATCTCACCGACGAAGCTTTTCCGGAGGAGGCTTCCAGgtatgccatc ... tcctgttcagGAACATGAATTTCAACAATGTCAAAGTTCCCAAGGTGCCAGGCGGTGGTGC
EST: gi|110729989|gb|EE106553.1|EE106553
EST:     ACCAGACGATCTGATCTCACTGACGAAGCTTTTCCGGAGGAGGCTTCCAG                         GAACATGAATTTCAACAATGTCAAAGTTCCCAAGGTGCCAGGTGGTGGTGC
genomic: ACCAGACGATCTGATCTCACCGACGAAGCTTTTCCGGAGGAGGCTTCCAGgtatgccatc ... tcctgttcagGAACATGAATTTCAACAATGTCAAAGTTCCCAAGGTGCCAGGCGGTGGTGC
EST: gi|110718347|gb|EE095076.1|EE095076
EST:     ACCAGACGATCTGATCTCACTGACGAAGCTTTTCCGGAGGAGGCTTCCAG                         GAACATGAATTTCAACAATGTCAAAGTTCCCAAGGTGCCAGGTGGTGGTGC
genomic: ACCAGACGATCTGATCTCACCGACGAAGCTTTTCCGGAGGAGGCTTCCAGgtatgccatc ... tcctgttcagGAACATGAATTTCAACAATGTCAAAGTTCCCAAGGTGCCAGGCGGTGGTGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGAGGCGCAGGGAGCACGATCACCGGCGACCAGACGATCTGATCTCACCGACGAAGCTTTTCCGGAGGAGGCTTCCAGgtatgccatctcatttcctcgttctttattctacttggagtgggggagaggtcgggattctccttcttctttctctgggctggatagggctatggttggc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccatctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggggaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctccttc