Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
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 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAATATGGTTCGAAATTTTTGAGTGATGGACAGCCTGGTACTGCCCAAAATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAGgttgggtgataccgtacattgtggtgtaaaactttgatctatatacatgcgtgtgtgtatacatacatacatatatatatatatatatatattacccttg...

Basic information

species Vitis vinifera
transcript Vv15s0048g01890.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0048g01890.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os06g03660.2 (Oryza sativa), 5'ss of exon 1
ACAATATGGTTCGAAATTTTTGAGTGATGGACAGCCTGGTACTGCCCAAAATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAGgttgggtgataccgtacattgtggtgtaaaactttgatctatatacatgcgtgtgtgtatacatacatacatatatatatatatatatatattacccttg
||||||||| ||||||||| ||||| ||||||| || ||  |||| || ||||||||||| || || ||  | || || ||||||||||| |||||||||||   ||  ||       |   |  ||| |  ||  |  |    |  |   | |   ||     ||||  || | |      | || ||| || |     
ACAATATGGCTCGAAATTTGTGAGTAATGGACAACCAGGGCCTGCACAGAATGTTGACAAGTCGACTAGTCTAGCTCGTAAAGTTTTCCGACTTTTTAAGgtaaagttttaatccttgtc-cgcagtagatattgcaaatgagaagctattttttcataccttgacatg-atctgtggcaccacat-tattttgcag---

upper sequence: Vv15s0048g01890.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA09G40060.2 (Glycine max), 5'ss of exon 2
ACAATATGGTTCGAAATTTTTGAGTGATGGACAGCCTGGTACTGCCCAAAATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAGgtt---gggtgataccgtacattgtggtgtaaaactttgatctatatacatgcgtgtgtgtatacatacatacatatatata-tatatatatatattacccttg
|||||||||||| |||||||||||| ||||  | ||||||||||| || ||||| |||||| |||||||||||||||| ||||| |||||||| |||||||||   || |  |          | | | | |||| |   | |  ||   | | | | | | |    |  ||  ||     | | | | | | | ||| |    
ACAATATGGTTCCAAATTTTTGAGTAATGGGGAACCTGGTACTGCTCAGAATGTAGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTCTTTAAGgttttaggttctttttactttccgagttttgaaacatgctttttcatcggttcatttttttttgt-catttaggtagtggcagtgttttttttttttatca---

upper sequence: Vv15s0048g01890.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA18G46140.3 (Glycine max), 5'ss of exon 3
ACAATATGGTTCGAAATTTTTGAGTGATGGACAGCCTGGTACTGCCCAAAATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAGgttgggtgataccgtacattgtgg--tgtaaaactttgatctatatacatgcgtgtgtgtatacatacata-catatatatatatata-tatatattacccttg
|||||||||||| |||||||||||| | ||  | ||||||||||| || ||||| |||||| |||||||||||||||| ||||| |||||||||||||||||| |||  |    ||| ||      | | |||| |   | |  ||  || | | | | | | | |   |  ||| |    |     | | | | |||  |   
ACAATATGGTTCCAAATTTTTGAGTAACGGGGAACCTGGTACTGCTCAGAATGTCGACAAAACAACCAGCTTGGCACGAAAAGTCTTCCGTCTTTTTAAGgttaggttctttt-tactttccaagttttgaaacatgctttttcatcgattcattttttttttcttttttgtcatttgggcagtggcagttttttttaatc---

upper sequence: Vv15s0048g01890.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT1G01820.1 (Arabidopsis thaliana), 5'ss of exon 2
ACAATATGGTTCGAAATTTTTGAGTGATGGACAGCCTGGTACTGCCCAAAATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAGgttgggtgataccgtacattgtggtgtaaaactttgatctatatacatgcgtgtgtgtatacatacatacatatatatatatatatatatattacccttg------
 ||||||||||| || || ||||||||||| || ||||| ||||| |||||||| |||||    |||||||||||  |||||||||||||||| || |||||||| |       | |||  |  | | ||||||  |   | |    | | ||     |  | ||     ||          | || | | |||   | |      
TCAATATGGTTCCAAGTTCTTGAGTGATGGCCAACCTGGCACTGCTCAAAATGTCGACAAGAACACCAGCTTGGCTAGGAAAGTTTTCCGTCTCTTCAAGgttggtt-----tcttcatcttt-tatcaaacttcaaatcacacttttacctgaaaccagtcttaagggtatgagctagctaacatctgttttaagttggtgactt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110685319|gb|EE063602.1|EE063602
EST:     ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAG                         TTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
genomic: ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAGgttgggtgat ... ctgattgcagTTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
EST: gi|71855306|gb|DT004361.1|DT004361
EST:     ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAG                         TTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
genomic: ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAGgttgggtgat ... ctgattgcagTTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
EST: gi|27585704|gb|CB008399.1|CB008399
EST:     ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAG                         TTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
genomic: ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAGgttgggtgat ... ctgattgcagTTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
EST: gi|161718258|gb|FC066959.1|FC066959
EST:     ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAG                         TTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
genomic: ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAGgttgggtgat ... ctgattgcagTTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
EST: gi|30256397|gb|CB972240.1|CB972240
EST:     ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAG                         TTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
genomic: ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAGgttgggtgat ... ctgattgcagTTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
EST: gi|34543960|gb|CF512192.1|CF512192
EST:     ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAG                         TTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
genomic: ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAGgttgggtgat ... ctgattgcagTTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
EST: gi|30254158|gb|CB971173.1|CB971173
EST:     ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAG                         TTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
genomic: ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAGgttgggtgat ... ctgattgcagTTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
EST: gi|26260326|gb|CA811389.1|CA811389
EST:     ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAG                         TTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
genomic: ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAGgttgggtgat ... ctgattgcagTTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
EST: gi|110701786|gb|EE079758.1|EE079758
EST:     ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAG                         TTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
genomic: ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAGgttgggtgat ... ctgattgcagTTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
EST: gi|30255822|gb|CB971954.1|CB971954
EST:     ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAG                         TTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
genomic: ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAGgttgggtgat ... ctgattgcagTTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
EST: gi|110413573|gb|EC979363.1|EC979363
EST:     ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAG                         TTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
genomic: ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAGgttgggtgat ... ctgattgcagTTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
EST: gi|30326206|gb|CD009468.1|CD009468
EST:     ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAG                         TTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
genomic: ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAGgttgggtgat ... ctgattgcagTTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
EST: gi|32267406|gb|CD716369.1|CD716369
EST:     ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAG                         TTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
genomic: ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAGgttgggtgat ... ctgattgcagTTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
EST: gi|33408880|gb|CF214507.1|CF214507
EST:     ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAG                         TTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
genomic: ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAGgttgggtgat ... ctgattgcagTTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
EST: gi|30253808|gb|CB971093.1|CB971093
EST:     GAAAGTTTTCCGTCTTTTTAAG                         TTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
genomic: GAAAGTTTTCCGTCTTTTTAAGgttgggtgat ... ctgattgcagTTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
EST: gi|30128631|gb|CB913970.1|CB913970
EST:     ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAG                         TTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
genomic: ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAGgttgggtgat ... ctgattgcagTTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
EST: gi|30323004|gb|CD006266.1|CD006266
EST:     ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAG                         TTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
genomic: ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAGgttgggtgat ... ctgattgcagTTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
EST: gi|18459069|gb|BM437358.1|BM437358
EST:     ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAG                         TTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
genomic: ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAGgttgggtgat ... ctgattgcagTTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
EST: gi|32269651|gb|CD718810.1|CD718810
EST:     ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAG                         TTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
genomic: ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAGgttgggtgat ... ctgattgcagTTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
EST: gi|161716547|gb|FC066220.1|FC066220
EST:     ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAG                         TTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
genomic: ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAGgttgggtgat ... ctgattgcagTTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
EST: gi|28961058|gb|CB340537.1|CB340537
EST:     ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAG                         TTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
genomic: ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAGgttgggtgat ... ctgattgcagTTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
EST: gi|18458719|gb|BM436997.1|BM436997
EST:     ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAG                         TTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
genomic: ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAGgttgggtgat ... ctgattgcagTTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
EST: gi|71879185|gb|DT028240.1|DT028240
EST:     ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAG                         TTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
genomic: ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAGgttgggtgat ... ctgattgcagTTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
EST: gi|37190433|gb|CF609782.1|CF609782
EST:     ATGTCGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAG                         TTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
genomic: ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAGgttgggtgat ... ctgattgcagTTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
EST: gi|26257001|gb|CA808064.1|CA808064
EST:     ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAG                         TTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
genomic: ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAGgttgggtgat ... ctgattgcagTTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
EST: gi|156735526|gb|EV239647.1|EV239647
EST:     ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAG                         TTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
genomic: ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAGgttgggtgat ... ctgattgcagTTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
EST: gi|34544048|gb|CF512280.1|CF512280
EST:     ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAG                         TTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
genomic: ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAGgttgggtgat ... ctgattgcagTTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
EST: gi|110687531|gb|EE065043.1|EE065043
EST:     ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAG                         TTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
genomic: ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAGgttgggtgat ... ctgattgcagTTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
EST: gi|161718317|gb|FC067266.1|FC067266
EST:     ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAG                         TTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
genomic: ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAGgttgggtgat ... ctgattgcagTTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
EST: gi|26257202|gb|CA808265.1|CA808265
EST:     ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAG                         TTTGTCAATGACCTACATGCTCTTACTAGTCCAGCTCCTCAAGGGACTCCT
genomic: ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAGgttgggtgat ... ctgattgcagTTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
EST: gi|71856241|gb|DT005296.1|DT005296
EST:     ATGTTGACAAATCAACCAGCCTGGCACGGAAAGTTTTCCGTCTTTTTAAG                         TTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
genomic: ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAGgttgggtgat ... ctgattgcagTTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
EST: gi|22012360|gb|BQ797394.1|BQ797394
EST:     ATG-TGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAG                         TTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
genomic: ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAGgttgggtgat ... ctgattgcagTTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
EST: gi|30256179|gb|CB972022.1|CB972022
EST:     AAGTTTTCCGTCTTTTTAAG                         TTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
genomic: AAGTTTTCCGTCTTTTTAAGgttgggtgat ... ctgattgcagTTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
EST: gi|32245233|gb|CD711052.1|CD711052
EST:     CGTCTTTTTAAG                         TTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGAGTCCT
genomic: CGTCTTTTTAAGgttgggtgat ... ctgattgcagTTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
EST: gi|71856891|gb|DT005946.1|DT005946
EST:     ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAG                         TTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
genomic: ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAGgttgggtgat ... ctgattgcagTTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
EST: gi|32265320|gb|CD716909.1|CD716909
EST:     ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAG                         TTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
genomic: ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAGgttgggtgat ... ctgattgcagTTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
EST: gi|161711302|gb|FC059099.1|FC059099
EST:     ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAG                         TTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
genomic: ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAGgttgggtgat ... ctgattgcagTTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
EST: gi|71855655|gb|DT004710.1|DT004710
EST:     ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAG                         TTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
genomic: ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAGgttgggtgat ... ctgattgcagTTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
EST: gi|294964069|gb|GW837872.1|GW837872
EST:     ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAG                         TTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
genomic: ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAGgttgggtgat ... ctgattgcagTTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
EST: gi|29784482|gb|CB345278.2|CB345278
EST:     ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAG                         TTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
genomic: ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAGgttgggtgat ... ctgattgcagTTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
EST: gi|30131945|gb|CB917284.1|CB917284
EST:     ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAG                         TTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
genomic: ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAGgttgggtgat ... ctgattgcagTTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
EST: gi|110730254|gb|EE107122.1|EE107122
EST:     ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAG                         TTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
genomic: ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAGgttgggtgat ... ctgattgcagTTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
EST: gi|71859218|gb|DT008273.1|DT008273
EST:     ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAG                         TTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
genomic: ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAGgttgggtgat ... ctgattgcagTTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
EST: gi|26264426|gb|CA815489.1|CA815489
EST:     ATGTAGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAG                         TTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
genomic: ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAGgttgggtgat ... ctgattgcagTTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
EST: gi|110699462|gb|EE076482.1|EE076482
EST:     ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAG                         TTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
genomic: ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAGgttgggtgat ... ctgattgcagTTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
EST: gi|110694713|gb|EE072070.1|EE072070
EST:     ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAG                         TTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
genomic: ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAGgttgggtgat ... ctgattgcagTTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
EST: gi|26262332|gb|CA813395.1|CA813395
EST:     ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAG                         TTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
genomic: ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAGgttgggtgat ... ctgattgcagTTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
EST: gi|32272185|gb|CD721344.1|CD721344
EST:     ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAG                         TTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
genomic: ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAGgttgggtgat ... ctgattgcagTTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
EST: gi|27583486|gb|CB006181.1|CB006181
EST:     ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAG                         TTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
genomic: ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAGgttgggtgat ... ctgattgcagTTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
EST: gi|77583842|gb|DV220955.1|DV220955
EST:     ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAG                         TTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
genomic: ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAGgttgggtgat ... ctgattgcagTTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
EST: gi|30129202|gb|CB914541.1|CB914541
EST:     ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAG                         TTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
genomic: ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAGgttgggtgat ... ctgattgcagTTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
EST: gi|161720374|gb|FC069835.1|FC069835
EST:     ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAG                         TTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
genomic: ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAGgttgggtgat ... ctgattgcagTTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
EST: gi|110404214|gb|EC968923.1|EC968923
EST:     GCTTGGCACGGAAAGTTTTCCGTCTTTTTAAG                         TTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
genomic: GCTTGGCACGGAAAGTTTTCCGTCTTTTTAAGgttgggtgat ... ctgattgcagTTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
EST: gi|110702542|gb|EE081378.1|EE081378
EST:     ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAG                         TTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
genomic: ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAGgttgggtgat ... ctgattgcagTTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
EST: gi|28960193|gb|CB340097.1|CB340097
EST:     ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAG                         TTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
genomic: ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAGgttgggtgat ... ctgattgcagTTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
EST: gi|110376382|gb|EC941443.1|EC941443
EST:     ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAG                         TTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
genomic: ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAGgttgggtgat ... ctgattgcagTTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
EST: gi|30132633|gb|CB917972.1|CB917972
EST:     ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAG                         TTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
genomic: ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAGgttgggtgat ... ctgattgcagTTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
EST: gi|161721235|gb|FC070741.1|FC070741
EST:     ATGTTGACAAATCAACTAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAG                         TTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
genomic: ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAGgttgggtgat ... ctgattgcagTTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
EST: gi|110360721|gb|EC924050.1|EC924050
EST:     ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAG                         TTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
genomic: ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAGgttgggtgat ... ctgattgcagTTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
EST: gi|110370992|gb|EC934673.1|EC934673
EST:     ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAG                         TTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
genomic: ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAGgttgggtgat ... ctgattgcagTTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
EST: gi|30133319|gb|CB918658.1|CB918658
EST:     ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAG                         TTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
genomic: ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAGgttgggtgat ... ctgattgcagTTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
EST: gi|26265906|gb|CA816969.1|CA816969
EST:     CGGAAAGTTTTTCCGTCTTTTTAAG                         TTTGTCAATGACCTACATGCTCTTATTAGTCCCAGCTCCTCAAGGGACTCC
genomic: CGGAAAG-TTTTCCGTCTTTTTAAGgttgggtgat ... ctgattgcagTTTGTCAATGACCTACATGCTCTTATTAGT-CCAGCTCCTCAAGGGACTCC
EST: gi|30321490|gb|CD004752.1|CD004752
EST:     ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAG                         TTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT
genomic: ATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAGgttgggtgat ... ctgattgcagTTTGTCAATGACCTACATGCTCTTATTAGTCCAGCTCCTCAAGGGACTCCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACAATATGGTTCGAAATTTTTGAGTGATGGACAGCCTGGTACTGCCCAAAATGTTGACAAATCAACCAGCTTGGCACGGAAAGTTTTCCGTCTTTTTAAGgttgggtgataccgtacattgtggtgtaaaactttgatctatatacatgcgtgtgtgtatacatacatacatatatatatatatatatatattacccttg

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