1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CAACTCAGATTACAAGGATTAGTCCTGTTGGTGGTGGTTGCATTAATCTTGCTAGTCGTTATGACACTGATGCTGGTTCTTTCTTCGTTAAAACAAACAGgtatttggttatcctaacacgtacaaaagtccgttctgctttctggggatttactggtacaagtgctattttaactgatttgagatttcataccattgaaccacag
species | Vitis vinifera |
transcript | Vv15s0048g01810.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GCTAGTCGTTATGACACTGATGCTGGTTCTTTCTTCGTTAAAACAAACAG GAGTATCGGCCCATCAATGTTTGAGGGGGAGGCTCTTGGTCTTGGTGCTATEST: gi|351044742|gb|FQ448996.1|FQ448996
genomic: GCTAGTCGTTATGACACTGATGCTGGTTCTTTCTTCGTTAAAACAAACAGgtatttggtt ... tgaaccacagGAGTATCGGGCCATCAATGTTTGAGGGGGAGGCTCTTGGTCTTGGTGCTAT
EST: GCTAGTCGTTATGACACTGATGCTGGTTCTTTCTTCGTTAAAACAAACAG GAGTATCGGCCCATCAATGTTTGAGGGGGAGGCTCTTGGTCTTGGTGCTATEST: gi|351013105|gb|FQ424810.1|FQ424810
genomic: GCTAGTCGTTATGACACTGATGCTGGTTCTTTCTTCGTTAAAACAAACAGgtatttggtt ... tgaaccacagGAGTATCGGGCCATCAATGTTTGAGGGGGAGGCTCTTGGTCTTGGTGCTAT
EST: GCTAGTCGTTATGACACTGATGCTGGTTCTTTCTTCGTTAAAACAAACAG GAGTATCGGCCCATCAATGTTTGAGGGGGAGGCTCTTGGTCTTGGTGCTATEST: gi|110713565|gb|EE089595.1|EE089595
genomic: GCTAGTCGTTATGACACTGATGCTGGTTCTTTCTTCGTTAAAACAAACAGgtatttggtt ... tgaaccacagGAGTATCGGGCCATCAATGTTTGAGGGGGAGGCTCTTGGTCTTGGTGCTAT
EST: GCTAGTCGTTATGAAACTGATGCTGGTTCTTTCTTCATTAAAACAAACAG GAGTATCGGGCCATCAATGTTTGAGGGGGAGGCTCTTGGTCTTGGTGCTAT
genomic: GCTAGTCGTTATGACACTGATGCTGGTTCTTTCTTCGTTAAAACAAACAGgtatttggtt ... tgaaccacagGAGTATCGGGCCATCAATGTTTGAGGGGGAGGCTCTTGGTCTTGGTGCTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAACTCAGATTACAAGGATTAGTCCTGTTGGTGGTGGTTGCATTAATCTTGCTAGTCGTTATGACACTGATGCTGGTTCTTTCTTCGTTAAAACAAACAGgtatttggttatcctaacacgtacaaaagtccgttctgctttctggggatttactggtacaagtgctattttaactgatttgagatttcataccattgaaccacag
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