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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACATGTCCTTTATTGCTTCGGGTTTTCACTAAGgtatgttcaccttttggactataaccttttttccttcaattagatgtttttgtcctcaaaattcttaccaacatatttcagttgagcgttgaagttatat...

Basic information

species Vitis vinifera
transcript Vv15s0048g01290.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34320559|gb|CF373313.1|CF373313
EST:     ACATGTCCTTTATTGCTTCGGGTTTTCACTAAG                         ATTGGATGTCATCACTCCAAGGAAGACTTTGTAGTGAGAGGGAAGGAGCCC
genomic: ACATGTCCTTTATTGCTTCGGGTTTTCACTAAGgtatgttcac ... atttctatagATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCC
EST: gi|77580933|gb|DV219396.1|DV219396
EST:     ACATGTCCTTTATTGCTTCGGGTTTTCACTAAG                         ATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCC
genomic: ACATGTCCTTTATTGCTTCGGGTTTTCACTAAGgtatgttcac ... atttctatagATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCC
EST: gi|110387106|gb|EC951749.1|EC951749
EST:     ACATGTCCTTTATTGCTTCGGGTTTTCACTAAG                         ATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCC
genomic: ACATGTCCTTTATTGCTTCGGGTTTTCACTAAGgtatgttcac ... atttctatagATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCC
EST: gi|34416260|gb|CF415014.1|CF415014
EST:     ACATGTCCTTTATTGCTTCGGGTTTTCACTAAG                         ATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCC
genomic: ACATGTCCTTTATTGCTTCGGGTTTTCACTAAGgtatgttcac ... atttctatagATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCC
EST: gi|352795349|gb|FQ476464.1|FQ476464
EST:     ACATGTCCTTTATTGCTTCGGGTTTTCACTAAG                         ATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCC
genomic: ACATGTCCTTTATTGCTTCGGGTTTTCACTAAGgtatgttcac ... atttctatagATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCC
EST: gi|110692354|gb|EE071504.1|EE071504
EST:     ACATGTCCTTTATTGCTTCGGGTTTTCACTAAG                         ATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCC
genomic: ACATGTCCTTTATTGCTTCGGGTTTTCACTAAGgtatgttcac ... atttctatagATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCC
EST: gi|110391304|gb|EC956269.1|EC956269
EST:     ACATGTCCTTTATTGCTTCGGGTTTTCACTAAG                         ATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCC
genomic: ACATGTCCTTTATTGCTTCGGGTTTTCACTAAGgtatgttcac ... atttctatagATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCC
EST: gi|34415403|gb|CF414157.1|CF414157
EST:     ACATGTCCTTTATTGCTTCGGGTTTTCACTAAG                         ATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCC
genomic: ACATGTCCTTTATTGCTTCGGGTTTTCACTAAGgtatgttcac ... atttctatagATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCC
EST: gi|77582171|gb|DV220047.1|DV220047
EST:     ACATGTCCTTTATTGCTTCGGGTTTTCACTAAG                         ATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCC
genomic: ACATGTCCTTTATTGCTTCGGGTTTTCACTAAGgtatgttcac ... atttctatagATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCC
EST: gi|71876098|gb|DT025153.1|DT025153
EST:     ACATGTCCTTTATTGCTTCGGGTTTTCACTAAG                         ATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCC
genomic: ACATGTCCTTTATTGCTTCGGGTTTTCACTAAGgtatgttcac ... atttctatagATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCC
EST: gi|34319505|gb|CF372259.1|CF372259
EST:     ACATGTCCTTTATTGCTTCGGGTTTTCACTAAG                         ATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCC
genomic: ACATGTCCTTTATTGCTTCGGGTTTTCACTAAGgtatgttcac ... atttctatagATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCC
EST: gi|32249822|gb|CD715641.1|CD715641
EST:     ACATGTCCTTTATTGCTTCGGGTTTTCACTAAG                         ATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCC
genomic: ACATGTCCTTTATTGCTTCGGGTTTTCACTAAGgtatgttcac ... atttctatagATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCC
EST: gi|27584880|gb|CB007575.1|CB007575
EST:     ACATGTCCTTTATTGCTTCGGGTTTTCACTAAG                         ATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCC
genomic: ACATGTCCTTTATTGCTTCGGGTTTTCACTAAGgtatgttcac ... atttctatagATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCC
EST: gi|71871892|gb|DT020947.1|DT020947
EST:     ACATGTCCTTTATTGCTTCGGGTTTTCACTAAG                         ATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCC
genomic: ACATGTCCTTTATTGCTTCGGGTTTTCACTAAGgtatgttcac ... atttctatagATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCC
EST: gi|110686597|gb|EE064413.1|EE064413
EST:     ACATGTCCTTTATTGCTTCGGGTTTTCACTAAG                         ATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCC
genomic: ACATGTCCTTTATTGCTTCGGGTTTTCACTAAGgtatgttcac ... atttctatagATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCC
EST: gi|351043680|gb|FQ431033.1|FQ431033
EST:     ACATGTCCTTTATTGCTTCGAGTTTTCACTAAG                         ATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCC
genomic: ACATGTCCTTTATTGCTTCGGGTTTTCACTAAGgtatgttcac ... atttctatagATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCC
EST: gi|110406199|gb|EC971762.1|EC971762
EST:     ACATGTCCTTTATTGCTTCGGGTTTTCACTAAG                         ATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCC
genomic: ACATGTCCTTTATTGCTTCGGGTTTTCACTAAGgtatgttcac ... atttctatagATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCC
EST: gi|71871238|gb|DT020293.1|DT020293
EST:     ACATGTCCTTTATTGCTTCGGGTTTTCACTAAG                         ATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCC
genomic: ACATGTCCTTTATTGCTTCGGGTTTTCACTAAGgtatgttcac ... atttctatagATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCC
EST: gi|30330289|gb|CD013551.1|CD013551
EST:     ACATGTCCTTTATTGCTTCGGGTTTTCACTAAG                         ATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCC
genomic: ACATGTCCTTTATTGCTTCGGGTTTTCACTAAGgtatgttcac ... atttctatagATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCC
EST: gi|110686299|gb|EE063779.1|EE063779
EST:     ACATGTCCTTTATTGCTTCGGGTTTTCACTAAG                         ATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCC
genomic: ACATGTCCTTTATTGCTTCGGGTTTTCACTAAGgtatgttcac ... atttctatagATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCC
EST: gi|110384243|gb|EC948668.1|EC948668
EST:     ACATGTCCTTTATTGCTTCGGGTTTTCACTAAG                         ATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCC
genomic: ACATGTCCTTTATTGCTTCGGGTTTTCACTAAGgtatgttcac ... atttctatagATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCC
EST: gi|71872736|gb|DT021791.1|DT021791
EST:     ACATGTCCTTTATTGCTTCGGGTTTTCACTAAG                         ATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCC
genomic: ACATGTCCTTTATTGCTTCGGGTTTTCACTAAGgtatgttcac ... atttctatagATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCC
EST: gi|32265218|gb|CD716807.1|CD716807
EST:     ACATGTCCTTTATTGCTTCGGGTTTTCACTAAG                         ATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCC
genomic: ACATGTCCTTTATTGCTTCGGGTTTTCACTAAGgtatgttcac ... atttctatagATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCC
EST: gi|87585618|gb|DY474262.1|DY474262
EST:     ACATGTCCTTTATTGCTTCGGGTTTTCACTAAG                         ATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCC
genomic: ACATGTCCTTTATTGCTTCGGGTTTTCACTAAGgtatgttcac ... atttctatagATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCC
EST: gi|30329674|gb|CD012936.1|CD012936
EST:     ACATGTCCTTTATTGCTTCGGGTTTTCACTAAG                         ATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCC
genomic: ACATGTCCTTTATTGCTTCGGGTTTTCACTAAGgtatgttcac ... atttctatagATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCC
EST: gi|71870444|gb|DT019499.1|DT019499
EST:     ACATGTCCTTTATTGCTTCGGGTTTTCACTAAG                         ATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCC
genomic: ACATGTCCTTTATTGCTTCGGGTTTTCACTAAGgtatgttcac ... atttctatagATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCC
EST: gi|349826849|gb|FQ418940.1|FQ418940
EST:     ACATGTCCTTTATTGCTTCGGGTTTTCACTAAG                         ATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCC
genomic: ACATGTCCTTTATTGCTTCGGGTTTTCACTAAGgtatgttcac ... atttctatagATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCC
EST: gi|51050834|gb|CO818752.1|CO818752
EST:     ACATGTCCTTTATTGCTTCGGGTTTTCACTAAG                         ATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCC
genomic: ACATGTCCTTTATTGCTTCGGGTTTTCACTAAGgtatgttcac ... atttctatagATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCC
EST: gi|110710456|gb|EE086805.1|EE086805
EST:     ACATGTCCTTTATTGCTTCGGGTTTTCACTAAG                         ATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCC
genomic: ACATGTCCTTTATTGCTTCGGGTTTTCACTAAGgtatgttcac ... atttctatagATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCC
EST: gi|51989993|gb|CV179448.1|CV179448
EST:     ACATGTCCTTTATTGCTTCGGGTTTTCACTAAG                         ATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCC
genomic: ACATGTCCTTTATTGCTTCGGGTTTTCACTAAGgtatgttcac ... atttctatagATTGGATGTCATCACTCCAAGGAAGACTTTGCAGTGAGAGGGAAGGAGCCC