1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GGATTAACGTGGCTTCTTCCAGAACGATTTTCATCTTCAGAAATAGGACCAGAAGCAGgttttgtgaaactttggtaacatttggcttcttcttgttagcttagaacctgataccatgggggttttctttctttatttgagaaaccttctattgattt...
species | Vitis vinifera |
transcript | Vv15s0048g01140.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GTGGCTTCTTCCAGAACGATTTTCATCTTCAGAAATAGGACCAGAAGCAG TAACTGCATTCTTGGGTATAATCACCGCAATCAATGAACATATAATAGACTEST: gi|161721268|gb|FC070027.1|FC070027
genomic: GTGGCTTCTTCCAGAACGATTTTCATCTTCAGAAATAGGACCAGAAGCAGgttttgtgaa ... tcttctgcagTAACTGCATTCTTGGGTATAATCACCGCAATCAATGAACATATAATAGACT
EST: GTGGCTTCTTCCAGAACGATTTTCATCTTCAGAAATAGGACCAGAAGCAG TAACTGCATTCTTGGGTATAATCACCGCAATCAATGAACATATAATAGACTEST: gi|161715318|gb|FC064594.1|FC064594
genomic: GTGGCTTCTTCCAGAACGATTTTCATCTTCAGAAATAGGACCAGAAGCAGgttttgtgaa ... tcttctgcagTAACTGCATTCTTGGGTATAATCACCGCAATCAATGAACATATAATAGACT
EST: GTGGCTTCTTCCAGAACGATTTTCATCTTCAGAAATAGGACCAGAAGCAG TAACTGCATTCTTGGGTATAAT--CCGCAATCAATGAACATATAATAGACTEST: gi|71877159|gb|DT026214.1|DT026214
genomic: GTGGCTTCTTCCAGAACGATTTTCATCTTCAGAAATAGGACCAGAAGCAGgttttgtgaa ... tcttctgcagTAACTGCATTCTTGGGTATAATCACCGCAATCAATGAACATATAATAGACT
EST: GTGGCTTCTTCCAGAACGATTTTCATCTTCAGAAATAGGACCAGAAGCAG TAACTGCATTCTTGGGTATAATCACCGCAATCAATGAACATATAATAGACT
genomic: GTGGCTTCTTCCAGAACGATTTTCATCTTCAGAAATAGGACCAGAAGCAGgttttgtgaa ... tcttctgcagTAACTGCATTCTTGGGTATAATCACCGCAATCAATGAACATATAATAGACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGATTAACGTGGCTTCTTCCAGAACGATTTTCATCTTCAGAAATAGGACCAGAAGCAGgttttgtgaaactttggtaacatttggcttcttcttgttagcttagaacctgataccatgggggttttctttctttatttgagaaaccttctattgattt
- - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgagaaa